Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CS059_RS05480 Genome accession   NZ_CP024597
Coordinates   1218246..1218986 (+) Length   246 a.a.
NCBI ID   WP_043898307.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 2796     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1213246..1223986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS059_RS05460 (CS059_05420) aspS 1213310..1215451 (-) 2142 WP_004583797.1 aspartate--tRNA ligase -
  CS059_RS12355 - 1215637..1215885 (-) 249 WP_143738753.1 DUF1661 domain-containing protein -
  CS059_RS05465 (CS059_05425) ribD 1215882..1216874 (-) 993 WP_004583799.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  CS059_RS05470 (CS059_05430) prmC 1216899..1217780 (+) 882 WP_004583800.1 peptide chain release factor N(5)-glutamine methyltransferase -
  CS059_RS05475 (CS059_05435) - 1217777..1218262 (+) 486 WP_004583801.1 regulatory protein RecX -
  CS059_RS05480 (CS059_05440) comF 1218246..1218986 (+) 741 WP_043898307.1 ComF family protein Machinery gene
  CS059_RS05485 (CS059_05445) - 1219116..1221185 (-) 2070 WP_043898309.1 M13 family metallopeptidase -
  CS059_RS05490 (CS059_05450) - 1221204..1222106 (-) 903 WP_077082938.1 nucleotidyltransferase -
  CS059_RS12100 - 1222288..1222422 (-) 135 WP_004583805.1 hypothetical protein -
  CS059_RS05495 (CS059_05455) - 1222526..1223107 (-) 582 WP_004583806.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27493.98 Da        Isoelectric Point: 10.0451

>NTDB_id=254159 CS059_RS05480 WP_043898307.1 1218246..1218986(+) (comF) [Porphyromonas gingivalis strain KCOM 2796]
MRKTANGTGRHIRLMIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=254159 CS059_RS05480 WP_043898307.1 1218246..1218986(+) (comF) [Porphyromonas gingivalis strain KCOM 2796]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGATGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCGCGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAAGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGGGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTATTGGTGGCAGCCGTTACCAAGCGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

99.593

100

0.996

Multiple sequence alignment