Detailed information NTG0254162

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: CS374_RS03405
• Genome accession: NZ_CP024598
• Coordinates: 733538..734278 (-)
• Length: 246 a.a.
• NCBI ID: WP_005875257.1
• Uniprot ID: A0A0E2LU95
• Organism: Porphyromonas gingivalis strain KCOM 2798
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	732565..733467	733538..734278	flank	71

Gene organization within MGE regions

Location: 732565..734278

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CS374_RS03400 (CS374_03365)	-	732565..733467 (+)	903	WP_012457521.1	IS982-like element IS195 family transposase	-
CS374_RS03405 (CS374_03370)	comF	733538..734278 (-)	741	WP_005875257.1	ComF family protein	Machinery gene

Sequence

Protein

• Length: 246 a.a.
• Molecular weight: 27475.95 Da
• Isoelectric Point: 10.0451

>NTDB_id=254162 CS374_RS03405 WP_005875257.1 733538..734278(-) (comF) [Porphyromonas gingivalis strain KCOM 2798]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide

• Length: 741 bp

>NTDB_id=254162 CS374_RS03405 WP_005875257.1 733538..734278(-) (comF) [Porphyromonas gingivalis strain KCOM 2798]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCACGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAGGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGAGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTACTGGTGGCAGCCGTTACCAAGCGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (140-236)

3D structure

• AlphaFold DB: A0A0E2LU95

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Porphyromonas gingivalis W83	100	100	1