Detailed information NTG0252993

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: CSE15_RS16940
• Genome accession: NZ_CP024204
• Coordinates: 3231476..3232162 (-)
• Length: 228 a.a.
• NCBI ID: WP_182488940.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain P-10
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3226476..3237162

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSE15_RS16905 (CSE15_16975)	fliW	3226612..3227046 (-)	435	WP_025208061.1	flagellar assembly protein FliW	-
CSE15_RS16910 (CSE15_16980)	-	3227075..3227653 (-)	579	WP_099496870.1	DUF6470 family protein	-
CSE15_RS16915 (CSE15_16985)	flgL	3227700..3228611 (-)	912	WP_008348257.1	flagellar hook-associated protein FlgL	-
CSE15_RS16920 (CSE15_16990)	flgK	3228620..3230140 (-)	1521	WP_099496871.1	flagellar hook-associated protein FlgK	-
CSE15_RS16925 (CSE15_16995)	-	3230156..3230638 (-)	483	WP_007499977.1	flagellar protein FlgN	-
CSE15_RS16930 (CSE15_17000)	flgM	3230657..3230920 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
CSE15_RS16935 (CSE15_17005)	-	3231000..3231419 (-)	420	WP_017357864.1	TIGR03826 family flagellar region protein	-
CSE15_RS16940 (CSE15_17010)	comFC	3231476..3232162 (-)	687	WP_182488940.1	ComF family protein	Machinery gene
CSE15_RS16945 (CSE15_17015)	-	3232159..3232452 (-)	294	WP_099496873.1	late competence development ComFB family protein	-
CSE15_RS16950 (CSE15_17020)	comFA	3232517..3233896 (-)	1380	WP_157774431.1	DEAD/DEAH box helicase	Machinery gene
CSE15_RS16955 (CSE15_17025)	-	3234016..3234858 (-)	843	WP_007499966.1	DegV family protein	-
CSE15_RS16960 (CSE15_17030)	degU	3235070..3235759 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
CSE15_RS16965 (CSE15_17035)	degS	3235824..3236999 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26186.81 Da
• Isoelectric Point: 10.3820

>NTDB_id=252993 CSE15_RS16940 WP_182488940.1 3231476..3232162(-) (comFC) [Bacillus altitudinis strain P-10]
MICPICESHFVAAFTWKSFLLLNEDRLCVACKNHLMKIQGPTCPKCGRAQSNDQLCHDCSRWNKRRDFAEILVMNRSVYA
YNDFMKDVLARFKFRGDTALADLFKKDVHSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPILEPLIKVH
QRKQSKKRKNERLHQQKLFQLRQANPIVLKDIILIDDIYTTGATVYHAAKILKDAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=252993 CSE15_RS16940 WP_182488940.1 3231476..3232162(-) (comFC) [Bacillus altitudinis strain P-10]
TTGATTTGTCCAATTTGTGAGAGCCATTTTGTGGCTGCTTTTACATGGAAATCATTCCTACTATTAAATGAAGATCGTTT
ATGTGTAGCATGTAAGAACCACCTCATGAAGATTCAAGGTCCTACTTGTCCCAAATGCGGAAGAGCGCAATCAAATGATC
AATTGTGTCATGATTGTTCAAGGTGGAATAAACGACGGGATTTTGCTGAGATTCTTGTAATGAATCGGTCTGTTTATGCT
TACAACGACTTTATGAAAGATGTTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTTAGCTGATCTATTTAAAAAAGA
TGTACATTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTGCTTGTCCCAATTCCTTTGAGTAAAGAGAGATTAA
AGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTGGAGCCACTTATAAAAGTACAT
CAAAGGAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAAGTTGTTTCAATTAAGGCAGGCAAACCCGAT
CGTTCTAAAGGATATCATATTAATCGATGATATTTATACAACTGGGGCGACAGTCTATCATGCAGCAAAAATTTTAAAAG
ACGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (165-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	49.565	100	0.5
comFC/cflB	Streptococcus mitis SK321	38.428	100	0.386
comFC/cflB	Streptococcus mitis NCTC 12261	37.991	100	0.382
comFC/cflB	Streptococcus pneumoniae TIGR4	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae Rx1	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae D39	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae R6	37.118	100	0.373