Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CSE15_RS16960 Genome accession   NZ_CP024204
Coordinates   3235070..3235759 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain P-10     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3230070..3240759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSE15_RS16925 (CSE15_16995) - 3230156..3230638 (-) 483 WP_007499977.1 flagellar protein FlgN -
  CSE15_RS16930 (CSE15_17000) flgM 3230657..3230920 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  CSE15_RS16935 (CSE15_17005) - 3231000..3231419 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  CSE15_RS16940 (CSE15_17010) comFC 3231476..3232162 (-) 687 WP_182488940.1 ComF family protein Machinery gene
  CSE15_RS16945 (CSE15_17015) - 3232159..3232452 (-) 294 WP_099496873.1 late competence development ComFB family protein -
  CSE15_RS16950 (CSE15_17020) comFA 3232517..3233896 (-) 1380 WP_157774431.1 DEAD/DEAH box helicase Machinery gene
  CSE15_RS16955 (CSE15_17025) - 3234016..3234858 (-) 843 WP_007499966.1 DegV family protein -
  CSE15_RS16960 (CSE15_17030) degU 3235070..3235759 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  CSE15_RS16965 (CSE15_17035) degS 3235824..3236999 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  CSE15_RS16970 (CSE15_17040) - 3237221..3237889 (+) 669 WP_017357860.1 YigZ family protein -
  CSE15_RS16975 (CSE15_17045) - 3237874..3238971 (+) 1098 WP_007499958.1 LCP family protein -
  CSE15_RS16980 (CSE15_17050) - 3239009..3240076 (-) 1068 WP_007499956.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=252995 CSE15_RS16960 WP_008348273.1 3235070..3235759(-) (degU) [Bacillus altitudinis strain P-10]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=252995 CSE15_RS16960 WP_008348273.1 3235070..3235759(-) (degU) [Bacillus altitudinis strain P-10]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGACACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment