Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MOTT16_RS09960 Genome accession   NZ_CP024185
Coordinates   2262392..2263615 (-) Length   407 a.a.
NCBI ID   WP_100274138.1    Uniprot ID   A0AAD0AWW8
Organism   Moraxella osloensis strain TT16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2257392..2268615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOTT16_RS09940 (MOTT16_11065) - 2258221..2259324 (+) 1104 WP_227522655.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -
  MOTT16_RS09945 (MOTT16_11070) - 2259394..2260800 (+) 1407 WP_007115073.1 nicotinate phosphoribosyltransferase -
  MOTT16_RS09950 (MOTT16_11075) coaE 2260858..2261466 (-) 609 WP_100274136.1 dephospho-CoA kinase -
  MOTT16_RS09955 (MOTT16_11080) pilD 2261511..2262365 (-) 855 WP_157797036.1 prepilin peptidase Machinery gene
  MOTT16_RS09960 (MOTT16_11085) pilC 2262392..2263615 (-) 1224 WP_100274138.1 type II secretion system F family protein Machinery gene
  MOTT16_RS09965 (MOTT16_11090) pilB 2263672..2265378 (-) 1707 WP_100274139.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MOTT16_RS09970 (MOTT16_11095) tpiA 2265801..2266655 (+) 855 WP_100274140.1 triose-phosphate isomerase -
  MOTT16_RS09975 (MOTT16_11100) secG 2266746..2267066 (+) 321 WP_062332397.1 preprotein translocase subunit SecG -
  MOTT16_RS09990 (MOTT16_11115) rimP 2267630..2268139 (+) 510 WP_100270612.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44876.84 Da        Isoelectric Point: 9.5933

>NTDB_id=252823 MOTT16_RS09960 WP_100274138.1 2262392..2263615(-) (pilC) [Moraxella osloensis strain TT16]
MAKVQTEMLLDFVYDGVNRRGEKVKGETTSRNIELAKAQLRKQGIQVKTIKKKPKPIFQMKKSIKPIDIAIFVRQLATMM
KAGVPLTQSFEIVADALDNPSMKELVLSVKSEVESGSTFAAALRKHPRYFDDLFCSLVEAGEQSGALETMLERVATYKEK
SELLKAKIKKALKYPIAVIVVAIIVTIILLVKVVPVFADLFHSFGAELPAFTQMVVNMSEWMQKWWWLLLFSIAGAVVGF
SEAKKRSKPFNDFLDRLTLKLPIFGNIAYQAVVARFSRTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQKIKGDVATG
QQLQFSMRSTNLFPSMAIQMVGIGEESGSLEEMLDKVATYYENEVDNAVDGLTSLMEPMIMAVLGVLVGGLVIAMYLPIF
QMGSVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=252823 MOTT16_RS09960 WP_100274138.1 2262392..2263615(-) (pilC) [Moraxella osloensis strain TT16]
ATGGCAAAAGTCCAAACAGAAATGTTATTAGACTTTGTCTATGATGGGGTCAATCGCCGTGGCGAAAAAGTCAAAGGCGA
AACCACCAGCCGCAATATTGAGCTGGCAAAAGCGCAACTACGCAAGCAAGGCATCCAAGTCAAGACGATTAAGAAAAAAC
CTAAGCCTATTTTTCAAATGAAAAAAAGCATCAAGCCAATTGATATTGCTATCTTTGTGCGGCAGTTGGCTACGATGATG
AAAGCAGGTGTACCGCTTACACAGTCGTTTGAAATTGTTGCAGATGCGCTCGATAACCCCTCAATGAAAGAGTTGGTGCT
TAGTGTCAAGTCAGAAGTGGAATCAGGGAGCACCTTTGCTGCAGCGCTGCGCAAACATCCTAGATATTTTGATGACTTGT
TTTGTTCATTAGTAGAGGCAGGTGAGCAATCAGGTGCGCTTGAAACTATGCTTGAGCGTGTCGCGACGTACAAAGAAAAA
AGCGAGCTACTAAAAGCAAAAATTAAAAAAGCCTTGAAATACCCGATTGCGGTTATCGTGGTTGCGATTATCGTTACCAT
TATTTTGCTAGTTAAAGTAGTTCCGGTGTTTGCTGACTTATTCCATTCATTTGGCGCAGAGTTACCTGCGTTTACCCAAA
TGGTGGTCAATATGTCGGAGTGGATGCAAAAATGGTGGTGGTTATTGCTATTTAGCATTGCAGGCGCTGTTGTTGGCTTT
TCTGAAGCTAAAAAACGTAGCAAACCCTTTAATGATTTTTTAGACCGACTTACCTTAAAATTACCAATCTTTGGCAATAT
TGCTTATCAAGCGGTGGTTGCCCGTTTTTCTCGTACTTTATCTACCACTTTTGCAGCAGGTGTGCCGCTGATTGATGCGT
TAGATTCAACCGCTGGAGCAACCAATAATGTGGTGTTTTATAATGCCACGCAAAAAATTAAAGGCGATGTTGCGACGGGT
CAACAGCTGCAGTTTTCGATGCGTTCTACTAATCTTTTTCCCAGTATGGCTATCCAAATGGTCGGTATTGGTGAAGAGTC
AGGTAGTCTAGAGGAGATGCTTGATAAAGTGGCGACTTATTATGAAAACGAAGTGGATAACGCCGTAGATGGGTTAACAA
GTCTGATGGAACCGATGATTATGGCTGTTTTGGGGGTGCTGGTAGGGGGTCTGGTGATTGCCATGTATCTACCAATTTTC
CAAATGGGCTCGGTGGTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

70.588

100

0.708
  pilC Acinetobacter baylyi ADP1

69.363

100

0.695
  pilC Pseudomonas stutzeri DSM 10701

64.81

97.052

0.629
  pilC Legionella pneumophila strain ERS1305867

55.639

98.034

0.545
  pilC Vibrio cholerae strain A1552

43.627

100

0.437
  pilG Neisseria gonorrhoeae MS11

44.361

98.034

0.435
  pilG Neisseria meningitidis 44/76-A

44.11

98.034

0.432
  pilC Vibrio campbellii strain DS40M4

41.5

98.28

0.408

Multiple sequence alignment