Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HCH_RS26850 Genome accession   NC_007645
Coordinates   6104404..6106611 (-) Length   735 a.a.
NCBI ID   WP_148212666.1    Uniprot ID   -
Organism   Hahella chejuensis KCTC 2396     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6099404..6111611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCH_RS26835 (HCH_05966) - 6100999..6102627 (-) 1629 WP_011399675.1 AAA family ATPase -
  HCH_RS26840 (HCH_05967) aroB 6102642..6103724 (-) 1083 WP_041599988.1 3-dehydroquinate synthase -
  HCH_RS26845 (HCH_05968) aroK 6103736..6104314 (-) 579 WP_011399677.1 shikimate kinase AroK -
  HCH_RS26850 (HCH_05969) pilQ 6104404..6106611 (-) 2208 WP_148212666.1 type IV pilus secretin PilQ Machinery gene
  HCH_RS26855 (HCH_10024) - 6106611..6107153 (-) 543 WP_011399679.1 pilus assembly protein PilP -
  HCH_RS26860 (HCH_05970) - 6107153..6107767 (-) 615 WP_011399680.1 type 4a pilus biogenesis protein PilO -
  HCH_RS26865 (HCH_05971) - 6107769..6108335 (-) 567 WP_011399681.1 PilN domain-containing protein -
  HCH_RS26870 (HCH_05972) pilM 6108335..6109399 (-) 1065 WP_011399682.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 79689.09 Da        Isoelectric Point: 4.5515

>NTDB_id=25210 HCH_RS26850 WP_148212666.1 6104404..6106611(-) (pilQ) [Hahella chejuensis KCTC 2396]
MKVYLRPFENLLEKTMTARIFRVWLSLLALGISGLTGAASLTGIEFAALPGDRTEVKLHFDSVPPEPKGYTIEQPARIAL
DFEGITNGLSERNHQLSKGNTQSVTVLEATGRTRIIVNLLELVPYTTGINGNTLVLQLGVNSGPGVTSSSSQDSSASTLT
STSSSATAQVNNSYSGKPSISEIDFLRGEKGDGRILITLTNSKVSVDMSEEAGNIRLQFAGVTLPANLQRRLDVTDFATP
VRIVDSYMEGGDTVLVVKPTGDYDYLAYQADNQFTLAVEPLTEDESEQRRKEKFPYTGEKLSLNFQDIEVRSVLQLIADF
TGLNLVASDTVGGRITLRLQNVPWDQALELILKTKGLDQRKVGNVLLVAPAEEIAAREKLELEASKQVKELAPVRLEVVQ
INYAKAKDIVNLLKEDKDLISTRGFISSDERTNTISIRETADKIGQVRRLIQTWDIPVSQVLIEARIVRARSDAVEELGV
QWGGTRVAGNDDSGQILIGGGMESNIEASNEIARFNTELLNNRNSGDTTIPDGPTLATFPSALAVDLGVTRANTSGLAIG
FSKGSTLLQMELSAFESDGKGEIVAQPKIVTADRQTARIESGEEIPYQEASSSGATSVSFKKAVLSLEVTPQITPDDKII
MDLVINQDSRGVVTANIPSIDTNEIETQVLVGNGETIVLGGIFTSEQSSTVTKTPFLGDIPYLGRLFRKTENVNERSELL
VFITPKLITNGLIEN

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=25210 HCH_RS26850 WP_148212666.1 6104404..6106611(-) (pilQ) [Hahella chejuensis KCTC 2396]
ATGAAGGTATACCTTAGGCCATTTGAGAATCTTTTGGAGAAAACAATGACAGCGCGCATTTTTAGAGTCTGGTTGTCGTT
ACTAGCGCTAGGCATAAGCGGTTTGACCGGAGCAGCCAGTTTGACTGGAATTGAATTCGCCGCCCTTCCTGGGGATCGGA
CTGAGGTCAAATTGCATTTTGACTCTGTTCCTCCAGAACCTAAAGGGTACACAATTGAGCAGCCAGCACGAATCGCGTTA
GATTTTGAAGGCATTACTAATGGCCTTTCAGAAAGAAATCATCAGCTTTCAAAAGGCAATACTCAAAGTGTGACTGTATT
AGAAGCTACTGGGCGAACACGTATTATTGTAAATCTGCTCGAACTAGTTCCCTACACGACTGGAATAAACGGTAATACCC
TTGTTCTTCAATTGGGGGTAAATTCTGGCCCTGGTGTTACCAGTTCGAGTTCTCAAGATTCCTCAGCGTCTACACTTACA
TCTACGTCAAGCTCTGCAACGGCCCAAGTCAATAATAGCTACTCTGGCAAGCCTTCAATATCGGAAATTGACTTCCTGAG
AGGCGAGAAGGGCGATGGGCGTATTCTGATCACTCTTACCAACTCGAAAGTAAGCGTGGATATGTCTGAAGAGGCAGGAA
ATATCAGGCTGCAATTTGCCGGAGTAACGTTGCCAGCGAACTTGCAAAGAAGGCTGGACGTTACAGATTTTGCTACCCCA
GTGAGAATAGTTGACTCCTACATGGAAGGGGGGGATACAGTTTTGGTTGTTAAGCCGACAGGTGACTACGATTACTTGGC
TTATCAGGCTGATAATCAGTTCACTTTAGCTGTAGAGCCATTAACTGAAGATGAGTCAGAGCAACGTAGAAAAGAGAAAT
TCCCTTATACAGGGGAGAAGTTGTCACTTAACTTCCAAGACATTGAAGTGCGTTCTGTTCTGCAGTTGATTGCTGATTTT
ACTGGCCTTAACTTGGTTGCCAGTGACACTGTTGGAGGTCGTATTACGCTTAGATTGCAGAATGTTCCTTGGGATCAGGC
TTTAGAGTTGATCCTTAAAACTAAAGGTCTTGACCAGCGTAAGGTCGGTAATGTCCTGTTAGTTGCTCCAGCAGAAGAAA
TTGCAGCGCGGGAAAAGCTGGAGCTTGAAGCAAGTAAGCAAGTGAAGGAGCTTGCTCCAGTTCGTTTAGAGGTTGTGCAG
ATTAATTACGCTAAGGCGAAAGATATTGTTAACTTATTGAAAGAAGATAAGGACTTAATCTCTACTAGAGGGTTTATATC
TTCAGATGAAAGAACAAATACAATCAGTATTCGAGAAACTGCTGATAAAATTGGCCAGGTTCGGAGACTCATTCAGACTT
GGGATATACCTGTAAGTCAGGTGCTCATTGAGGCTCGAATTGTTCGAGCTAGGTCCGACGCTGTTGAAGAGCTAGGTGTT
CAGTGGGGGGGGACCCGTGTTGCAGGTAATGATGACTCTGGCCAGATTCTCATTGGTGGTGGAATGGAATCAAATATTGA
AGCCAGTAATGAGATTGCTCGATTTAACACTGAGCTACTCAACAACCGCAATAGTGGAGACACCACTATCCCTGATGGCC
CTACTTTGGCTACATTTCCTAGTGCATTGGCTGTTGATCTAGGGGTTACTAGAGCTAATACTAGCGGACTGGCGATCGGT
TTTAGTAAAGGGTCAACATTGTTACAGATGGAGCTTTCAGCATTTGAGTCAGATGGTAAAGGGGAAATTGTCGCTCAACC
TAAAATCGTAACTGCGGATAGGCAGACTGCTAGAATTGAGTCTGGAGAAGAGATCCCATATCAAGAAGCGTCGTCCAGTG
GAGCCACATCAGTCTCCTTTAAGAAGGCTGTGCTGTCGTTAGAAGTAACTCCGCAGATTACGCCGGACGATAAAATTATT
ATGGATCTGGTTATTAACCAAGATTCTCGTGGCGTTGTAACCGCTAATATTCCTAGTATTGACACCAACGAGATCGAGAC
TCAAGTTTTGGTTGGTAACGGCGAAACAATAGTCTTGGGTGGAATTTTTACATCTGAGCAGTCTTCTACTGTGACAAAGA
CTCCGTTCCTGGGCGATATTCCCTATCTTGGTAGGTTGTTCAGAAAGACTGAAAATGTAAATGAACGCTCTGAGTTGCTG
GTGTTCATCACCCCCAAACTAATCACTAACGGCCTGATCGAAAATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(574-728)

Bacterial type II/III secretion system short domain (Secretin_N)

(397-460)

AMIN domain (AMIN)

(52-138)

Secretin and TonB N terminus short domain (STN)

(324-370)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

50.409

99.864

0.503
  comQ Acinetobacter baylyi ADP1

40.22

98.776

0.397
  pilQ Acinetobacter baumannii D1279779

38.34

100

0.396
  pilQ Acinetobacter baumannii strain A118

38.34

100

0.396
  pilQ Legionella pneumophila strain ERS1305867

40.284

95.918

0.386
  pilQ Legionella pneumophila strain Lp02

40.284

95.918

0.386

Multiple sequence alignment