Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   HCH_RS26870 Genome accession   NC_007645
Coordinates   6108335..6109399 (-) Length   354 a.a.
NCBI ID   WP_011399682.1    Uniprot ID   Q2S9Q0
Organism   Hahella chejuensis KCTC 2396     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6103335..6114399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCH_RS26845 (HCH_05968) aroK 6103736..6104314 (-) 579 WP_011399677.1 shikimate kinase AroK -
  HCH_RS26850 (HCH_05969) pilQ 6104404..6106611 (-) 2208 WP_148212666.1 type IV pilus secretin PilQ Machinery gene
  HCH_RS26855 (HCH_10024) - 6106611..6107153 (-) 543 WP_011399679.1 pilus assembly protein PilP -
  HCH_RS26860 (HCH_05970) - 6107153..6107767 (-) 615 WP_011399680.1 type 4a pilus biogenesis protein PilO -
  HCH_RS26865 (HCH_05971) - 6107769..6108335 (-) 567 WP_011399681.1 PilN domain-containing protein -
  HCH_RS26870 (HCH_05972) pilM 6108335..6109399 (-) 1065 WP_011399682.1 pilus assembly protein PilM Machinery gene
  HCH_RS26875 (HCH_05973) - 6109577..6111988 (+) 2412 WP_011399683.1 penicillin-binding protein 1A -
  HCH_RS26880 (HCH_05974) - 6112046..6113317 (-) 1272 WP_011399684.1 malic enzyme-like NAD(P)-binding protein -
  HCH_RS26885 rpmE 6113559..6113777 (-) 219 WP_041598962.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38248.45 Da        Isoelectric Point: 4.2831

>NTDB_id=25211 HCH_RS26870 WP_011399682.1 6108335..6109399(-) (pilM) [Hahella chejuensis KCTC 2396]
MFGLFGKKKQPVLGLDISSTSVKLIELSQQGSRYRVDSYAVEPLPPNAVVEKNINDAEAVGEVISRVVSKARVSTKHAAV
AVAGSAVITKVIQMSSSIREQDLESQIQIEADQYIPYPLDEVALDFEMVGPNEVNAEMMDVLLAACRRENVELREDALEI
GGLTTKVVDVEAYAMERAMGLIEAQLGTGDESQTVAVVDIGATMTTLSVLSDGKTIYTREQLFGGKQLTEEIQRRYGLSQ
EEAGLAKKQGGLPDDYEQEVLHPFKEAVVQQVARSLQFFFSSTQFNEVDFIILAGGTASIPGIAELVQERVGTTTLVANP
FADMTVSSKVNASALSNDAPSLMIACGLAMRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=25211 HCH_RS26870 WP_011399682.1 6108335..6109399(-) (pilM) [Hahella chejuensis KCTC 2396]
GTGTTTGGACTATTTGGAAAGAAAAAACAGCCGGTCTTAGGGCTTGATATCAGTTCTACATCGGTCAAGCTGATTGAACT
CAGTCAGCAGGGCAGTCGATATCGAGTGGATAGTTACGCCGTGGAGCCTTTGCCGCCGAACGCAGTCGTTGAGAAGAATA
TCAATGATGCCGAAGCTGTAGGTGAAGTGATCTCGAGAGTTGTCAGCAAAGCGCGGGTCAGCACCAAGCATGCGGCGGTT
GCAGTCGCAGGTTCTGCGGTTATTACAAAAGTTATTCAGATGAGCTCTTCAATTCGAGAGCAAGATCTGGAATCGCAAAT
TCAAATAGAAGCGGACCAATATATCCCTTACCCGCTGGACGAGGTCGCTTTGGACTTTGAGATGGTGGGGCCGAATGAAG
TTAATGCTGAGATGATGGATGTCCTGTTGGCGGCTTGCCGACGGGAAAATGTCGAACTGCGTGAGGATGCATTGGAAATC
GGCGGCCTGACCACCAAGGTCGTAGACGTCGAAGCTTACGCTATGGAACGCGCGATGGGACTCATAGAAGCGCAGCTCGG
TACAGGAGACGAGTCTCAAACTGTCGCCGTTGTGGATATCGGCGCCACCATGACCACGCTGAGTGTGTTGTCAGACGGCA
AGACAATCTATACACGCGAACAGCTATTTGGCGGCAAGCAGCTTACGGAAGAAATACAGCGCCGATATGGCTTGTCTCAA
GAGGAAGCCGGGCTGGCCAAGAAGCAAGGCGGTTTACCTGACGACTATGAGCAGGAAGTCTTGCATCCGTTTAAAGAAGC
TGTTGTGCAGCAAGTGGCTAGATCGCTGCAGTTCTTTTTCTCATCTACTCAGTTCAACGAGGTTGATTTCATTATTTTAG
CTGGGGGGACAGCCTCAATTCCTGGTATCGCTGAATTGGTTCAGGAACGGGTAGGAACCACAACGCTGGTGGCGAACCCA
TTTGCAGACATGACAGTGTCGTCAAAGGTTAATGCGTCAGCATTAAGTAATGACGCTCCCTCTCTCATGATCGCGTGCGG
ATTGGCAATGAGGAGTTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2S9Q0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

55.65

100

0.557
  comM Acinetobacter nosocomialis M2

55.367

100

0.554
  comM Acinetobacter baylyi ADP1

52.825

100

0.528
  pilM Legionella pneumophila strain ERS1305867

44.35

100

0.444

Multiple sequence alignment