Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CK911_RS20595 Genome accession   NZ_CP023817
Coordinates   4532742..4533062 (-) Length   106 a.a.
NCBI ID   WP_068977766.1    Uniprot ID   A0A291TPT3
Organism   Aeromonas sp. CU5     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4527742..4538062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK911_RS20575 (CK911_20575) - 4528141..4528839 (-) 699 WP_068977762.1 DnaT-like ssDNA-binding domain-containing protein -
  CK911_RS20580 (CK911_20580) - 4529078..4530049 (+) 972 WP_098972284.1 response regulator -
  CK911_RS20585 (CK911_20585) - 4530124..4531521 (-) 1398 WP_068977764.1 peptide MFS transporter -
  CK911_RS20590 (CK911_20590) galU 4531735..4532646 (-) 912 WP_098972287.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CK911_RS20595 (CK911_20595) comEA 4532742..4533062 (-) 321 WP_068977766.1 ComEA family DNA-binding protein Machinery gene
  CK911_RS20600 (CK911_20600) pta 4533440..4535611 (-) 2172 WP_042018566.1 phosphate acetyltransferase -
  CK911_RS20605 (CK911_20605) - 4535665..4536867 (-) 1203 WP_042018565.1 acetate kinase -
  CK911_RS20610 (CK911_20610) yfbV 4537172..4537612 (+) 441 WP_042018563.1 terminus macrodomain insulation protein YfbV -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11274.22 Da        Isoelectric Point: 9.6564

>NTDB_id=250319 CK911_RS20595 WP_068977766.1 4532742..4533062(-) (comEA) [Aeromonas sp. CU5]
MLMKKLSAVMLLACLPLFSQPVLAAEKTAPKQTTTTAAAKEDGKLNINTATLAELTSLKGIGDKKAQAIIDYRDKQGKFT
SVDQLADVNGIGPATLDANREMIVVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=250319 CK911_RS20595 WP_068977766.1 4532742..4533062(-) (comEA) [Aeromonas sp. CU5]
ATGCTGATGAAGAAGCTCTCTGCAGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCCGTGCTGGCAGCGGAGAA
AACTGCGCCCAAACAGACCACCACAACCGCTGCCGCCAAGGAGGACGGCAAACTGAATATCAATACGGCTACCCTTGCCG
AACTCACCAGCCTCAAAGGTATTGGTGACAAAAAGGCGCAAGCCATCATCGATTACCGTGATAAACAGGGAAAATTCACC
TCGGTCGATCAGCTGGCAGATGTCAATGGCATAGGTCCGGCCACGCTAGATGCAAACAGGGAGATGATTGTCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291TPT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

49.057

100

0.491
  comEA Vibrio cholerae strain A1552

49.057

100

0.491
  comEA/comE1 Glaesserella parasuis strain SC1401

46.018

100

0.491
  comE1/comEA Haemophilus influenzae Rd KW20

45.536

100

0.481
  comEA Vibrio parahaemolyticus RIMD 2210633

42

94.34

0.396
  comEA Legionella pneumophila str. Paris

42.424

93.396

0.396
  comEA Legionella pneumophila strain ERS1305867

42.424

93.396

0.396
  comEA Vibrio campbellii strain DS40M4

40

94.34

0.377

Multiple sequence alignment