Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   CP943_RS20065 Genome accession   NZ_CP023665
Coordinates   3918108..3918680 (-) Length   190 a.a.
NCBI ID   WP_105981266.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac84     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3913108..3923680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP943_RS20045 - 3913995..3915293 (+) 1299 WP_023857118.1 hemolysin family protein -
  CP943_RS20050 - 3915442..3916653 (+) 1212 WP_023857117.1 ammonium transporter -
  CP943_RS20055 - 3916673..3917023 (+) 351 WP_003185936.1 P-II family nitrogen regulator -
  CP943_RS20060 - 3917246..3917629 (+) 384 WP_103749405.1 hypothetical protein -
  CP943_RS20065 clpP 3918108..3918680 (-) 573 WP_105981266.1 ATP-dependent Clp protease proteolytic subunit Regulator
  CP943_RS20070 - 3918694..3919299 (-) 606 WP_020453224.1 RNA polymerase sigma factor -
  CP943_RS20075 - 3919435..3920310 (-) 876 WP_023857113.1 M23 family metallopeptidase -
  CP943_RS20080 - 3920504..3921001 (+) 498 WP_020453226.1 GNAT family N-acetyltransferase -
  CP943_RS20085 - 3921052..3921495 (-) 444 WP_025810657.1 YwnF family protein -
  CP943_RS20090 cls 3921743..3923191 (+) 1449 WP_025810656.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21074.24 Da        Isoelectric Point: 5.3555

>NTDB_id=249067 CP943_RS20065 WP_105981266.1 3918108..3918680(-) (clpP) [Bacillus paralicheniformis strain Bac84]
MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFNDDLANRVTAQLLFLSAEDNEKDISIYINSPGGSTSAGYAILDT
MDYVKPDVRTICVGMAASMGAILLAGGTKGKRYALKNSEIMIHQPLGGVKGQATDMEISAKRIIKLREKIEHFFHERTGQ
PIEKLKADMERDYFMDADEAKAYGIIDAVL

Nucleotide


Download         Length: 573 bp        

>NTDB_id=249067 CP943_RS20065 WP_105981266.1 3918108..3918680(-) (clpP) [Bacillus paralicheniformis strain Bac84]
ATGAACACCATACCTTACGTCATTGAGAAAACGGCTGCCGGTGAAAGATCGTACGATATTTTTTCCAGACTTTTAAAAGA
CCGGATCATTATGATCGGCTCTGAATTCAACGATGACCTCGCCAATCGGGTCACCGCCCAGTTGCTGTTTTTGTCAGCCG
AAGACAATGAAAAAGACATTTCGATCTATATCAACAGCCCGGGCGGATCAACTTCCGCGGGATATGCGATTTTGGATACG
ATGGACTATGTGAAGCCGGATGTCCGCACGATCTGCGTCGGAATGGCAGCTTCCATGGGAGCGATTCTTCTCGCCGGCGG
AACAAAAGGCAAACGGTATGCGCTCAAAAACAGCGAAATCATGATCCATCAGCCGCTCGGCGGCGTCAAAGGACAGGCGA
CAGACATGGAGATTTCAGCGAAGCGGATCATCAAACTGAGGGAAAAAATCGAGCACTTTTTTCACGAACGAACGGGCCAG
CCCATTGAAAAACTAAAAGCCGACATGGAACGTGATTATTTTATGGATGCGGACGAAGCGAAGGCATACGGGATTATTGA
TGCCGTTTTGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

65.263

100

0.653
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.032

98.421

0.611
  clpP Streptococcus thermophilus LMG 18311

56.085

99.474

0.558
  clpP Streptococcus thermophilus LMD-9

56.085

99.474

0.558
  clpP Streptococcus pyogenes MGAS315

55.026

99.474

0.547
  clpP Streptococcus pyogenes JRS4

55.026

99.474

0.547
  clpP Streptococcus pneumoniae D39

55.026

99.474

0.547
  clpP Streptococcus pneumoniae R6

55.026

99.474

0.547
  clpP Streptococcus pneumoniae TIGR4

55.026

99.474

0.547
  clpP Streptococcus pneumoniae Rx1

55.026

99.474

0.547
  clpP Streptococcus mutans UA159

54.497

99.474

0.542
  clpP Lactococcus lactis subsp. cremoris KW2

52.91

99.474

0.526
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.852

99.474

0.516

Multiple sequence alignment