Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   CO687_RS05600 Genome accession   NZ_CP023511
Coordinates   1134745..1135335 (+) Length   196 a.a.
NCBI ID   WP_008809559.1    Uniprot ID   A0A0F5MH19
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 1129745..1140335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS05590 (CO687_05590) mgtA 1131157..1133817 (+) 2661 WP_096755030.1 magnesium-translocating P-type ATPase -
  CO687_RS05595 (CO687_05595) upp 1133915..1134544 (+) 630 WP_002894672.1 uracil phosphoribosyltransferase -
  CO687_RS05600 (CO687_05600) clpP 1134745..1135335 (+) 591 WP_008809559.1 ATP-dependent Clp protease proteolytic subunit Regulator
  CO687_RS05605 (CO687_05605) - 1135413..1135682 (+) 270 WP_008809558.1 YlbG family protein -
  CO687_RS05610 (CO687_05610) - 1135772..1136938 (+) 1167 WP_061585601.1 ABC transporter substrate-binding protein -
  CO687_RS05615 (CO687_05615) - 1137097..1137966 (+) 870 WP_008809556.1 branched-chain amino acid ABC transporter permease -
  CO687_RS05620 (CO687_05620) - 1137970..1138923 (+) 954 WP_046165252.1 branched-chain amino acid ABC transporter permease -
  CO687_RS05625 (CO687_05625) - 1138923..1139687 (+) 765 WP_008809554.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21376.40 Da        Isoelectric Point: 4.4829

>NTDB_id=247980 CO687_RS05600 WP_008809559.1 1134745..1135335(+) (clpP) [Streptococcus gordonii strain FDAARGOS_371]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEQILADNSGK
TVEQIHADAERDYWMSAEETLAYGFIDEIMANNNLS

Nucleotide


Download         Length: 591 bp        

>NTDB_id=247980 CO687_RS05600 WP_008809559.1 1134745..1135335(+) (clpP) [Streptococcus gordonii strain FDAARGOS_371]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGGGAACGCTCGTATGATATTTACTCACGCCTATTAAAAGACCGCAT
CATCATGTTGACAGGTCCGGTAGAGGATAATATGGCTAATTCAGTCATTGCTCAGCTTCTTTTCTTGGATGCACAAGACA
GTACCAAGGATATCTACCTCTATGTTAATACACCAGGTGGTTCAGTCTCAGCTGGTTTAGCGATTGTTGACACCATGAAC
TTTATTAAATCTGATGTCCAAACAATCGTTATGGGTATGGCAGCGAGCATGGGAACCATCATCGCATCAAGCGGTGCCAA
AGGCAAACGTTTCATGCTTCCAAATGCTGAATATATGATTCACCAGCCAATGGGAGGAACTGGTGGTGGTACTCAGCAAA
CGGATATGGCTATTGCTGCGGAACACTTGTTGAAGACACGGAAAACTTTAGAGCAAATTCTTGCAGATAATTCTGGTAAA
ACAGTTGAGCAAATTCATGCTGATGCGGAACGTGATTATTGGATGAGTGCTGAAGAGACTCTTGCTTATGGATTCATTGA
TGAGATCATGGCTAACAATAATTTGAGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5MH19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes MGAS315

92.347

100

0.923
  clpP Streptococcus pneumoniae Rx1

92.347

100

0.923
  clpP Streptococcus pneumoniae D39

92.347

100

0.923
  clpP Streptococcus pneumoniae R6

92.347

100

0.923
  clpP Streptococcus pneumoniae TIGR4

92.347

100

0.923
  clpP Streptococcus pyogenes JRS4

92.347

100

0.923
  clpP Streptococcus thermophilus LMD-9

91.282

99.49

0.908
  clpP Streptococcus thermophilus LMG 18311

91.282

99.49

0.908
  clpP Streptococcus mutans UA159

90.256

99.49

0.898
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.179

99.49

0.867
  clpP Lactococcus lactis subsp. cremoris KW2

86.667

99.49

0.862
  clpP Bacillus subtilis subsp. subtilis str. 168

57.292

97.959

0.561
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.995

98.469

0.561

Multiple sequence alignment