Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   CO689_RS13100 Genome accession   NZ_CP023497
Coordinates   2541910..2542239 (-) Length   109 a.a.
NCBI ID   WP_002481038.1    Uniprot ID   -
Organism   Staphylococcus simulans strain FDAARGOS_383     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2536910..2547239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO689_RS13070 (CO689_13070) gcvPA 2537421..2538770 (-) 1350 WP_002481032.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  CO689_RS13075 (CO689_13075) gcvT 2538792..2539886 (-) 1095 WP_002481033.1 glycine cleavage system aminomethyltransferase GcvT -
  CO689_RS13080 (CO689_13080) - 2540065..2540604 (-) 540 WP_002481034.1 shikimate kinase -
  CO689_RS13090 (CO689_13090) comGF 2540769..2541263 (-) 495 WP_002481036.1 competence type IV pilus minor pilin ComGF -
  CO689_RS13095 (CO689_13095) - 2541482..2541892 (-) 411 WP_023015154.1 hypothetical protein -
  CO689_RS13100 (CO689_13100) comGC 2541910..2542239 (-) 330 WP_002481038.1 competence type IV pilus major pilin ComGC Machinery gene
  CO689_RS13105 (CO689_13105) comGB 2542257..2543330 (-) 1074 WP_002481039.1 competence type IV pilus assembly protein ComGB -
  CO689_RS13110 (CO689_13110) comGA 2543302..2544276 (-) 975 WP_002481040.1 competence type IV pilus ATPase ComGA Machinery gene
  CO689_RS13115 (CO689_13115) - 2544333..2544956 (-) 624 WP_002481041.1 MBL fold metallo-hydrolase -
  CO689_RS13120 (CO689_13120) - 2544956..2545285 (-) 330 WP_002481042.1 MTH1187 family thiamine-binding protein -
  CO689_RS13125 (CO689_13125) - 2545285..2546271 (-) 987 WP_002481043.1 ROK family glucokinase -
  CO689_RS13130 (CO689_13130) - 2546271..2546471 (-) 201 WP_002481044.1 YqgQ family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12084.23 Da        Isoelectric Point: 9.6828

>NTDB_id=247725 CO689_RS13100 WP_002481038.1 2541910..2542239(-) (comGC) [Staphylococcus simulans strain FDAARGOS_383]
MKNLVKNLKHKYLRAFTLLEMLLVLLVISVLLILIIPNIAKQSKHVQDTGCEAQQKMVNSQIEAFTLNKNRAPSSIDELV
SEGFLKEGQKTCKSGKTITISDGEATVSQ

Nucleotide


Download         Length: 330 bp        

>NTDB_id=247725 CO689_RS13100 WP_002481038.1 2541910..2542239(-) (comGC) [Staphylococcus simulans strain FDAARGOS_383]
ATGAAAAACCTTGTCAAAAACTTAAAACATAAATATTTACGAGCATTTACTTTACTAGAAATGCTTTTAGTTCTTTTAGT
TATCAGCGTTTTATTGATACTCATTATTCCAAATATCGCTAAACAATCTAAGCATGTTCAAGATACTGGGTGTGAAGCAC
AACAAAAAATGGTGAATAGCCAAATAGAAGCTTTTACTCTGAATAAAAATAGAGCGCCTTCTTCAATCGATGAATTAGTT
AGTGAAGGATTTTTAAAAGAAGGTCAAAAAACATGTAAATCTGGAAAAACGATTACAATCAGCGACGGCGAAGCTACCGT
TAGTCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

72.632

87.156

0.633
  comGC Staphylococcus aureus MW2

72.632

87.156

0.633
  comGC/cglC Streptococcus pneumoniae TIGR4

41.905

96.33

0.404
  comGC Bacillus subtilis subsp. subtilis str. 168

42.708

88.073

0.376
  comGC/cglC Streptococcus mitis SK321

46.067

81.651

0.376
  comGC/cglC Streptococcus mitis NCTC 12261

46.067

81.651

0.376
  comGC/cglC Streptococcus pneumoniae D39

44.944

81.651

0.367
  comGC/cglC Streptococcus pneumoniae Rx1

44.944

81.651

0.367
  comGC/cglC Streptococcus pneumoniae R6

44.944

81.651

0.367

Multiple sequence alignment