Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CO689_RS09615 Genome accession   NZ_CP023497
Coordinates   1805190..1805636 (+) Length   148 a.a.
NCBI ID   WP_070724736.1    Uniprot ID   -
Organism   Staphylococcus simulans strain FDAARGOS_383     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1800190..1810636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO689_RS09555 (CO689_09555) - 1800634..1800849 (+) 216 WP_057510824.1 hypothetical protein -
  CO689_RS09560 (CO689_09560) - 1800864..1801637 (+) 774 WP_096754543.1 Rha family transcriptional regulator -
  CO689_RS09565 (CO689_09565) - 1801648..1801962 (+) 315 WP_096754544.1 hypothetical protein -
  CO689_RS09570 (CO689_09570) - 1802098..1802307 (-) 210 WP_060804178.1 hypothetical protein -
  CO689_RS09575 (CO689_09575) - 1802385..1802603 (+) 219 WP_060804179.1 hypothetical protein -
  CO689_RS09585 (CO689_09585) - 1803117..1803335 (-) 219 WP_070724729.1 hypothetical protein -
  CO689_RS09590 (CO689_09590) - 1803398..1803616 (+) 219 WP_070724730.1 hypothetical protein -
  CO689_RS09595 (CO689_09595) - 1803634..1803861 (+) 228 WP_060804183.1 hypothetical protein -
  CO689_RS09600 (CO689_09600) - 1804106..1804345 (+) 240 WP_070684225.1 hypothetical protein -
  CO689_RS09605 (CO689_09605) - 1804338..1804568 (+) 231 WP_070684223.1 DUF2483 family protein -
  CO689_RS09610 (CO689_09610) - 1804561..1805190 (+) 630 WP_070724733.1 ERF family protein -
  CO689_RS09615 (CO689_09615) ssbA 1805190..1805636 (+) 447 WP_070724736.1 single-stranded DNA-binding protein Machinery gene
  CO689_RS09620 (CO689_09620) - 1805649..1806326 (+) 678 WP_096754545.1 putative HNHc nuclease -
  CO689_RS14235 - 1806521..1806961 (-) 441 WP_192940605.1 hypothetical protein -
  CO689_RS09630 (CO689_09630) - 1807027..1807782 (+) 756 WP_096754547.1 conserved phage C-terminal domain-containing protein -
  CO689_RS09635 (CO689_09635) - 1807783..1808568 (+) 786 WP_096754548.1 ATP-binding protein -
  CO689_RS09645 (CO689_09645) - 1808734..1809141 (+) 408 WP_096754550.1 RusA family crossover junction endodeoxyribonuclease -
  CO689_RS09650 (CO689_09650) - 1809142..1809333 (+) 192 WP_096754551.1 hypothetical protein -
  CO689_RS09655 (CO689_09655) - 1809346..1809867 (+) 522 WP_096754552.1 SA1788 family PVL leukocidin-associated protein -
  CO689_RS09660 (CO689_09660) - 1809867..1810304 (+) 438 WP_096754553.1 DUF3310 domain-containing protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16810.42 Da        Isoelectric Point: 4.9366

>NTDB_id=247718 CO689_RS09615 WP_070724736.1 1805190..1805636(+) (ssbA) [Staphylococcus simulans strain FDAARGOS_383]
MLNRVVLVGRLTKDPEFRTTQSGVDVATFTLAVNHNFKDKNGEQQADFINCVVFRKQAENVNNYLNKGSLAGVDGRLQSR
SYENNEGRRVFVTEVVCDSVQFLEPKNTQSSNNNQSNNQVQQREKALQSENPFNNSNNFDMDTDDLPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=247718 CO689_RS09615 WP_070724736.1 1805190..1805636(+) (ssbA) [Staphylococcus simulans strain FDAARGOS_383]
ATGTTAAATAGAGTCGTATTAGTAGGTCGCTTAACAAAAGACCCAGAATTCAGAACAACGCAAAGCGGTGTAGATGTAGC
AACATTCACACTAGCGGTCAACCATAATTTTAAGGATAAAAACGGAGAGCAACAGGCGGACTTTATCAACTGTGTTGTAT
TCCGTAAACAAGCAGAAAACGTCAATAATTATTTGAATAAAGGAAGTTTAGCAGGTGTCGATGGTCGCTTACAATCACGC
AGCTATGAAAACAACGAAGGCCGCCGTGTATTTGTTACGGAAGTCGTATGTGACAGTGTGCAATTCCTAGAACCTAAGAA
TACACAATCCTCAAACAATAACCAATCAAATAACCAAGTGCAGCAAAGAGAGAAGGCGCTTCAAAGCGAAAATCCATTCA
ATAATAGCAACAACTTTGATATGGATACGGATGATTTACCTTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.649
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

71.622

0.419
  ssb Glaesserella parasuis strain SC1401

31.148

100

0.385
  ssbB Streptococcus sobrinus strain NIDR 6715-7

37.162

100

0.372
  ssbB/cilA Streptococcus pneumoniae TIGR4

36.486

100

0.365
  ssbB/cilA Streptococcus mitis NCTC 12261

36.486

100

0.365

Multiple sequence alignment