Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | CMV05_RS09365 | Genome accession | NZ_CP023310 |
| Coordinates | 2010783..2011082 (-) | Length | 99 a.a. |
| NCBI ID | WP_017044597.1 | Uniprot ID | A0A233HCF5 |
| Organism | Vibrio anguillarum strain VIB12 isolate Sea bass | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2005783..2016082
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CMV05_RS09340 (CMV05_09340) | lapB | 2006200..2007369 (-) | 1170 | WP_026028046.1 | lipopolysaccharide assembly protein LapB | - |
| CMV05_RS09345 (CMV05_09345) | - | 2007389..2007664 (-) | 276 | WP_017044598.1 | lipopolysaccharide assembly protein LapA domain-containing protein | - |
| CMV05_RS09350 (CMV05_09350) | ihfB | 2007806..2008090 (-) | 285 | WP_010317449.1 | integration host factor subunit beta | - |
| CMV05_RS09355 (CMV05_09355) | rpsA | 2008167..2009837 (-) | 1671 | WP_013857179.1 | 30S ribosomal protein S1 | - |
| CMV05_RS09360 (CMV05_09360) | cmk | 2009941..2010621 (-) | 681 | WP_013857180.1 | (d)CMP kinase | - |
| CMV05_RS09365 (CMV05_09365) | comEA | 2010783..2011082 (-) | 300 | WP_017044597.1 | ComEA family DNA-binding protein | Machinery gene |
| CMV05_RS09370 (CMV05_09370) | ppiD | 2011219..2013078 (-) | 1860 | WP_096036474.1 | peptidylprolyl isomerase | - |
| CMV05_RS09375 (CMV05_09375) | - | 2013236..2013508 (-) | 273 | WP_026027116.1 | HU family DNA-binding protein | - |
| CMV05_RS09380 (CMV05_09380) | lon | 2013704..2016055 (-) | 2352 | WP_094133673.1 | endopeptidase La | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10776.69 Da Isoelectric Point: 9.6909
>NTDB_id=245872 CMV05_RS09365 WP_017044597.1 2010783..2011082(-) (comEA) [Vibrio anguillarum strain VIB12 isolate Sea bass]
MKLKTKLGLLLLSIVLPLSPTLAEEKVVETHQGIEITVNINQASAEEIATLLKGIGLKKAQAIVEYRQQNGDFKTKEDLS
LVKGIGAATVRQNAERIIL
MKLKTKLGLLLLSIVLPLSPTLAEEKVVETHQGIEITVNINQASAEEIATLLKGIGLKKAQAIVEYRQQNGDFKTKEDLS
LVKGIGAATVRQNAERIIL
Nucleotide
Download Length: 300 bp
>NTDB_id=245872 CMV05_RS09365 WP_017044597.1 2010783..2011082(-) (comEA) [Vibrio anguillarum strain VIB12 isolate Sea bass]
ATGAAATTGAAAACAAAACTCGGGTTGTTACTTCTAAGTATCGTATTGCCTCTTTCACCGACATTAGCAGAAGAAAAGGT
GGTAGAAACGCACCAAGGCATTGAAATTACGGTTAATATAAATCAGGCTTCCGCTGAGGAAATTGCTACTTTGTTGAAAG
GTATTGGACTTAAAAAAGCACAAGCGATTGTTGAATATCGTCAACAAAATGGTGATTTTAAAACCAAAGAAGATCTGAGC
TTGGTGAAAGGTATTGGTGCCGCTACTGTCAGGCAAAACGCTGAGCGTATCATTTTATAA
ATGAAATTGAAAACAAAACTCGGGTTGTTACTTCTAAGTATCGTATTGCCTCTTTCACCGACATTAGCAGAAGAAAAGGT
GGTAGAAACGCACCAAGGCATTGAAATTACGGTTAATATAAATCAGGCTTCCGCTGAGGAAATTGCTACTTTGTTGAAAG
GTATTGGACTTAAAAAAGCACAAGCGATTGTTGAATATCGTCAACAAAATGGTGATTTTAAAACCAAAGAAGATCTGAGC
TTGGTGAAAGGTATTGGTGCCGCTACTGTCAGGCAAAACGCTGAGCGTATCATTTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
60.194 |
100 |
0.626 |
| comEA | Vibrio cholerae strain A1552 |
60.194 |
100 |
0.626 |
| comEA | Vibrio campbellii strain DS40M4 |
59.184 |
98.99 |
0.586 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
60 |
90.909 |
0.545 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.179 |
100 |
0.455 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
40.909 |
100 |
0.455 |
| comEA | Legionella pneumophila str. Paris |
36.735 |
98.99 |
0.364 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.735 |
98.99 |
0.364 |