Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   VF_RS04890 Genome accession   NC_006840
Coordinates   1031186..1033216 (+) Length   676 a.a.
NCBI ID   WP_011261588.1    Uniprot ID   Q5E6B5
Organism   Aliivibrio fischeri ES114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1026186..1038216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF_RS04865 (VF0933) rsxC 1026708..1029191 (-) 2484 WP_011261587.1 electron transport complex subunit RsxC -
  VF_RS04870 (VF0934) rsxB 1029195..1029779 (-) 585 WP_005418571.1 electron transport complex subunit RsxB -
  VF_RS04875 (VF0935) rsxA 1029782..1030363 (-) 582 WP_005418573.1 electron transport complex subunit RsxA -
  VF_RS04890 (VF0936) uvrB 1031186..1033216 (+) 2031 WP_011261588.1 excinuclease ABC subunit UvrB Machinery gene
  VF_RS04895 (VF0937) luxO 1033510..1034940 (+) 1431 WP_011261589.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VF_RS04900 (VF0938) - 1034951..1035286 (+) 336 WP_233909801.1 Hpt domain-containing protein -
  VF_RS04905 (VF0939) yvcK 1035275..1036153 (-) 879 WP_005418582.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  VF_RS04910 (VF0940) moaA 1036536..1037525 (+) 990 WP_005418584.1 GTP 3',8-cyclase MoaA -
  VF_RS04915 (VF0941) moaC 1037538..1038017 (+) 480 WP_005418586.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 76770.50 Da        Isoelectric Point: 4.9728

>NTDB_id=24557 VF_RS04890 WP_011261588.1 1031186..1033216(+) (uvrB) [Aliivibrio fischeri ES114]
MSSAYELVSNYQPAGDQPQAIKTLNEGLENGLAHQTLLGVTGSGKTFTLANVIAHSGRPTIIMAHNKTLAAQLYGEMKAF
FPNNAVEYFVSYFDYYQPEAYVPTTDTFIEKDSSVNEHIEQMRLSATKALLERKDAIIIASVSAIYGLGDPKAYLSMILH
LRRGDIINQRDMLRRLAELQYKRNDMAFERGTFRVRGEVLDIFPAESEHEAIRIEMFDDEVERISKFDPLTGSIITKDMP
RCTIYPKTHYVTPREQVLDAIEKIKVDLAIRQKELLENNKLVEEQRITQRTQFDIEMMNELGFCSGIENYSRYLSGRPEG
EAPPTLFDYLPQDGLLIIDESHITVSQIGAMYKGDRSRKENLVEYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKY
EIEKSDGEIAEQVVRPTGLLDPVIEVRPVATQVDDLLSEIRIRTKNNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLEGKAILYADKITG
SMEKAIGETERRREKQQLHNETLGIVPQALKKDVADILELGDMTKNKRKVVAPKIKLSEVAEEGASYSAMSPQQLEKAIQ
KLESKMYQHAKDLEFEQAAQVRDEIDNLRKQFIVNS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=24557 VF_RS04890 WP_011261588.1 1031186..1033216(+) (uvrB) [Aliivibrio fischeri ES114]
ATGTCTAGTGCGTATGAACTCGTATCTAATTATCAACCTGCGGGCGATCAACCTCAAGCGATAAAAACACTTAATGAAGG
TCTTGAGAATGGGTTAGCTCATCAAACGTTATTGGGAGTTACTGGTTCAGGTAAAACATTTACTCTCGCTAATGTTATTG
CTCATTCTGGTCGCCCGACGATCATTATGGCTCATAACAAAACATTAGCAGCTCAGTTATACGGTGAAATGAAAGCTTTC
TTTCCAAATAACGCTGTTGAATATTTTGTTTCTTATTTTGATTATTACCAACCAGAAGCCTATGTACCAACGACGGATAC
ATTTATAGAAAAAGACTCATCGGTTAATGAGCACATTGAGCAAATGCGTTTATCAGCAACCAAAGCATTATTAGAGCGTA
AAGATGCGATTATTATTGCTTCAGTTTCTGCAATATATGGCTTAGGTGATCCAAAAGCCTATTTGAGTATGATACTGCAC
TTACGCCGTGGTGACATTATTAATCAAAGAGACATGTTGCGTCGTTTAGCCGAATTGCAATATAAGCGTAATGACATGGC
TTTTGAACGAGGCACATTTCGAGTTCGTGGAGAAGTATTGGATATTTTCCCAGCAGAGTCTGAACATGAAGCCATTCGTA
TTGAAATGTTTGATGATGAAGTTGAGCGTATTAGTAAATTTGATCCACTAACAGGATCAATCATAACGAAAGATATGCCA
CGTTGTACTATCTACCCTAAAACGCACTATGTAACCCCTCGTGAGCAGGTCTTAGATGCGATCGAAAAGATCAAAGTTGA
TCTTGCTATTAGACAAAAAGAATTGCTAGAAAATAACAAGCTTGTTGAAGAACAACGTATCACTCAACGGACTCAATTTG
ATATTGAAATGATGAACGAATTGGGTTTTTGCTCAGGTATAGAAAACTATTCACGTTATTTGAGTGGACGTCCGGAAGGT
GAAGCACCACCAACCTTGTTTGATTATTTACCACAAGATGGCCTATTAATTATCGATGAATCTCATATAACCGTTTCTCA
AATTGGTGCTATGTATAAGGGTGACCGCTCACGTAAAGAGAATTTAGTTGAGTATGGATTCAGATTACCGTCAGCTTTGG
ATAATCGTCCGCTACGATTTGAAGAATTTGAAGCATTAGCGCCTCAGACTATTTATGTCTCAGCCACACCGGGTAAATAT
GAGATTGAAAAGTCAGATGGTGAAATTGCAGAGCAAGTAGTACGTCCAACTGGATTATTAGACCCTGTAATTGAAGTTCG
CCCAGTAGCAACACAAGTTGATGATTTATTATCTGAGATCCGTATACGAACTAAAAATAATGAACGAGTATTAGTGACAA
CACTGACGAAGCGTATGGCTGAAGACTTAACGGAATATCTTGATGAGCATGGCGTAAAAGTTCGTTATTTACACTCAGAT
ATTGATACGGTTGAGCGTGTCGAAATTATACGTGATTTACGCTTAGGTGAGTTTGATGTCCTTGTTGGTATTAACTTACT
TCGAGAAGGTCTAGACATGCCTGAGGTTTCATTGGTTGCGATTTTAGATGCAGATAAAGAAGGATTTTTACGTTCTGAAC
GTTCGCTAATTCAAACGATTGGTCGCGCTGCTCGTAACTTAGAGGGTAAAGCCATTCTTTACGCTGATAAGATCACAGGT
TCAATGGAAAAAGCCATTGGTGAAACAGAAAGACGCAGAGAGAAGCAACAATTACACAATGAAACGTTAGGTATTGTTCC
ACAAGCGCTTAAGAAAGACGTTGCCGATATTCTTGAATTGGGTGATATGACTAAAAATAAACGTAAAGTTGTTGCACCTA
AGATTAAGTTATCGGAAGTTGCAGAAGAAGGCGCTAGTTACAGTGCGATGTCGCCACAGCAGTTAGAAAAGGCGATTCAG
AAGCTAGAAAGTAAGATGTATCAACATGCGAAAGACTTGGAATTTGAACAAGCGGCACAAGTTCGAGATGAGATTGATAA
TTTAAGAAAACAATTTATAGTGAATAGTTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(437-545)

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB/uvrC motif (UVR)

(636-671)

UvrB interaction domain (UvrB_inter)

(159-250)

Type III restriction enzyme, res subunit (ResIII)

(15-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5E6B5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.976

97.781

0.547
  uvrB Streptococcus pneumoniae R6

55.976

97.781

0.547
  uvrB Streptococcus pneumoniae D39

55.976

97.781

0.547

Multiple sequence alignment