Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   VF_RS04205 Genome accession   NC_006840
Coordinates   878420..878722 (+) Length   100 a.a.
NCBI ID   WP_011261493.1    Uniprot ID   Q5E6Q0
Organism   Aliivibrio fischeri ES114     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 873420..883722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF_RS04195 (VF0799) - 875875..876171 (+) 297 WP_011261491.1 HU family DNA-binding protein -
  VF_RS04200 (VF0800) ppiD 876376..878232 (+) 1857 WP_011261492.1 peptidylprolyl isomerase -
  VF_RS04205 (VF0801) comEA 878420..878722 (+) 303 WP_011261493.1 ComEA family DNA-binding protein Machinery gene
  VF_RS04210 (VF0802) - 878848..880203 (-) 1356 WP_005418260.1 peptide MFS transporter -
  VF_RS04215 (VF0803) rfaH 880586..881080 (+) 495 WP_005418261.1 transcription/translation regulatory transformer protein RfaH -
  VF_RS04220 (VF0804) asnB 881139..882806 (-) 1668 WP_011261494.1 asparagine synthase B -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10897.71 Da        Isoelectric Point: 8.5689

>NTDB_id=24555 VF_RS04205 WP_011261493.1 878420..878722(+) (comEA) [Aliivibrio fischeri ES114]
MKRILTLLSTLMLTLTLFSASVVAEVTKSDTHEGIEITVNINQAGAEELKTLLVGVGESKAQAIIDYRNANGKFVKADDL
TKVKGIGDKLVEKNRDRIIL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=24555 VF_RS04205 WP_011261493.1 878420..878722(+) (comEA) [Aliivibrio fischeri ES114]
ATGAAACGCATACTCACTTTACTCAGTACCTTGATGTTAACACTAACACTTTTCTCTGCTTCAGTAGTTGCAGAAGTAAC
AAAAAGCGATACACATGAAGGTATTGAAATAACGGTTAACATCAACCAAGCAGGAGCTGAAGAGCTAAAAACGTTATTGG
TTGGTGTTGGAGAATCAAAAGCTCAAGCGATAATTGATTACCGTAATGCTAACGGCAAGTTTGTCAAAGCTGATGATTTA
ACGAAAGTTAAAGGTATTGGGGATAAACTGGTTGAGAAAAACCGAGATAGAATCATATTGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(38-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5E6Q0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

55

100

0.55
  comEA Vibrio parahaemolyticus RIMD 2210633

55

100

0.55
  comEA Vibrio cholerae strain A1552

52.041

98

0.51
  comEA Vibrio cholerae C6706

52.041

98

0.51
  comEA/comE1 Glaesserella parasuis strain SC1401

43.81

100

0.46
  comEA Acinetobacter baumannii strain A118

34.426

100

0.42
  comEA Acinetobacter baylyi ADP1

50

82

0.41

Multiple sequence alignment