Detailed information NTG0024490

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: SYC_RS04685
• Genome accession: NC_006576
• Coordinates: 990910..993597 (+)
• Length: 895 a.a.
• NCBI ID: WP_011243200.1
• Uniprot ID: O34209
• Organism: Synechococcus elongatus PCC 6301
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 985910..998597

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SYC_RS04670 (syc0885_c)	-	986881..988647 (-)	1767	WP_011243197.1	ABC transporter ATP-binding protein	-
SYC_RS04675 (syc0886_c)	eno	988903..990195 (-)	1293	WP_011243198.1	phosphopyruvate hydratase	-
SYC_RS04680 (syc0887_d)	gloA	990409..990822 (+)	414	WP_011243199.1	lactoylglutathione lyase	-
SYC_RS04685 (syc0888_d)	clpC	990910..993597 (+)	2688	WP_011243200.1	ATP-dependent chaperone ClpB	Regulator
SYC_RS04690 (syc0889_d)	secE	993702..993947 (+)	246	WP_011243201.1	preprotein translocase subunit SecE	-
SYC_RS04695 (syc0890_d)	nusG	993956..994573 (+)	618	WP_011377657.1	transcription termination/antitermination protein NusG	-
SYC_RS04700 (syc0891_d)	rplK	994581..995006 (+)	426	WP_011243203.1	50S ribosomal protein L11	-
SYC_RS04705 (syc0892_d)	rplA	995081..995794 (+)	714	WP_011243204.1	50S ribosomal protein L1	-
SYC_RS04710 (syc0893_d)	rplJ	996023..996550 (+)	528	WP_011243205.1	50S ribosomal protein L10	-
SYC_RS04715 (syc0894_d)	rplL	996610..996996 (+)	387	WP_011243206.1	50S ribosomal protein L7/L12	-
SYC_RS04720 (syc0895_c)	-	997298..998440 (-)	1143	WP_011243207.1	DUF3747 domain-containing protein	-

Sequence

Protein

• Length: 895 a.a.
• Molecular weight: 99821.14 Da
• Isoelectric Point: 4.6559

>NTDB_id=24490 SYC_RS04685 WP_011243200.1 990910..993597(+) (clpC) [Synechococcus elongatus PCC 6301]
MQPTDPNRFTDQAWDAIVESQTVARQLRQQQLEVEHVLLALLDQESGVAAEILAKAGVAVANLRQPLEDFARRQPRNASG
TQLYLGRGLDRLLDLAERARELWQDEFIGVEHLLMGFVEDDRIGRRLAQGLKLDAKTLETTIQALRSPAADEAEAEESEP
SYPFLSKYGRDLTALAEQEKLDPVIGRDLEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEGLAQRIVAGEVPDSLKQRR
LISLDMGSLIAGAKYRGEFEERLRAVLHEVTHSDGQMVLFIDELHTVVGAGAGQQGSAMDAGNLLKPMLARGELRCIGAT
TTDEYRRTIEKDPALERRFQQVYVSQPSVEDTIAILRGLKERYEGHHGVKITDGALMAAAKLSHRYISDRFLPDKAIDLI
DEASAQLKMEITSKPSELEDLERRLLQLEMEQLSLSGENGQASVHSDRLQQIQTELQTLQEQQARLNQQWQQEKQLLEEL
GRLQEEEETLRQQVNQAEREHDLNKGAELKFGQLEALQQQRQAIEEQIQALHANGQTLLREQVEEADIAEIVARWTNIPV
QRLLESERQKLLQLESFLHQRVIGQDEAVVAVAAAIRRARAGMKDPSRPIGSFLFLGPTGVGKTELARALANCLFDAEDA
LIRFDMSEYMEKNSISRLIGAPPGYIGYEEGGQLSEAIRRHPYAVVLFDEVEKAHPDVFNLLLQVLDDGRITDSQGRTID
FCNAVIVMTSNIGSQFILEMGEEEASLDAVELKVLGALRQHFRPEFLNRIDDTILFQPLSRGQLQQIVDIQLQRLKRLLA
EQAIALNVTPAAAANLADRGYDPVYGARPLKRAIQRLIENPVASLILEQQFDAGDALIVDVDAEGQLQFQVSKPVTATVV
EPDDSPAIAVEAIPS

Nucleotide

• Length: 2688 bp

>NTDB_id=24490 SYC_RS04685 WP_011243200.1 990910..993597(+) (clpC) [Synechococcus elongatus PCC 6301]
ATGCAGCCCACCGACCCCAATCGTTTTACAGACCAAGCCTGGGATGCGATCGTCGAATCGCAAACTGTGGCTCGCCAACT
GCGGCAACAGCAGCTGGAAGTGGAGCACGTCCTCCTGGCCTTGCTCGATCAGGAGTCGGGGGTAGCTGCAGAAATTTTGG
CGAAAGCAGGGGTGGCAGTTGCCAACCTGCGGCAACCCCTCGAAGACTTTGCACGACGGCAGCCTCGCAATGCCTCGGGT
ACGCAGCTCTACCTAGGACGCGGCCTCGATCGCCTGCTGGACTTAGCAGAACGGGCGCGAGAACTCTGGCAAGACGAGTT
CATCGGCGTTGAGCATTTGCTGATGGGCTTCGTGGAGGACGATCGCATCGGTCGTCGCTTGGCGCAGGGTCTCAAACTCG
ATGCCAAAACACTCGAGACAACGATTCAAGCGTTGCGATCGCCCGCTGCCGATGAGGCTGAAGCAGAAGAGAGCGAACCC
AGCTATCCCTTCCTCAGCAAGTACGGTCGCGATCTGACAGCGCTGGCGGAACAGGAAAAACTCGATCCGGTGATTGGCCG
TGATCTGGAAATTCGTCGCGTCATTCAAGTGCTATCGCGGCGCAGTAAGAACAATCCCGTCCTGATTGGTGAACCGGGTG
TCGGCAAAACTGCGATCGCCGAAGGCTTGGCCCAGCGGATTGTTGCCGGTGAAGTACCGGATTCGCTCAAGCAACGGCGG
CTGATCAGCCTCGATATGGGTTCCCTGATTGCTGGTGCCAAATATCGCGGTGAGTTCGAGGAGCGGCTGCGGGCAGTTCT
GCACGAGGTCACCCACTCCGATGGCCAAATGGTGCTGTTCATCGACGAGCTACACACCGTCGTCGGAGCTGGGGCAGGTC
AGCAAGGCAGCGCCATGGATGCGGGCAACCTGCTCAAGCCGATGCTGGCGCGGGGCGAATTGCGCTGCATTGGCGCGACA
ACGACCGATGAATATCGCCGCACGATCGAGAAGGATCCAGCCCTCGAACGACGCTTCCAACAGGTCTACGTCAGCCAGCC
CAGCGTCGAAGACACGATCGCAATTCTGCGCGGCCTCAAGGAACGCTACGAGGGCCACCACGGCGTCAAGATTACCGACG
GCGCTCTGATGGCAGCGGCTAAACTCTCCCATCGCTACATCAGCGATCGCTTCTTGCCCGATAAAGCGATCGACCTGATC
GACGAAGCCTCAGCGCAACTGAAGATGGAGATCACCTCCAAACCCAGCGAGCTGGAGGATTTGGAACGACGGCTCCTGCA
ACTGGAAATGGAGCAACTGTCACTTAGCGGCGAGAACGGACAGGCCAGCGTTCACAGCGATCGCCTTCAGCAAATCCAGA
CTGAGCTGCAAACGCTGCAAGAACAGCAAGCCCGACTCAATCAACAGTGGCAGCAGGAAAAGCAACTACTGGAAGAACTC
GGCCGCCTGCAGGAGGAAGAAGAAACCCTACGTCAGCAGGTTAATCAGGCCGAACGCGAGCATGACCTCAACAAAGGTGC
TGAGCTGAAATTTGGGCAACTGGAAGCCCTGCAACAACAGCGGCAGGCGATCGAGGAGCAGATTCAAGCCCTGCACGCCA
ATGGGCAAACCTTGCTGCGCGAGCAGGTAGAAGAAGCCGATATTGCCGAAATCGTGGCGCGTTGGACCAATATTCCGGTG
CAACGTTTGCTGGAGTCGGAGCGCCAGAAGCTGCTCCAGCTCGAAAGTTTCTTGCACCAACGGGTGATCGGCCAAGATGA
AGCGGTCGTCGCCGTCGCTGCGGCGATTCGGCGAGCACGAGCGGGGATGAAAGATCCCAGCCGCCCGATCGGGTCGTTCC
TGTTCTTGGGGCCCACGGGTGTCGGTAAAACCGAGCTAGCTCGCGCCCTCGCCAACTGTCTGTTCGATGCCGAAGATGCG
CTGATTCGCTTCGACATGTCGGAGTACATGGAGAAGAATTCGATCTCGCGCCTGATTGGGGCGCCCCCCGGCTACATCGG
CTACGAAGAAGGCGGGCAGCTCTCAGAAGCCATCCGGCGCCATCCCTACGCGGTAGTGTTGTTCGACGAAGTCGAGAAAG
CGCATCCCGATGTGTTTAACCTACTGCTGCAGGTGCTCGACGATGGCCGGATCACCGACTCGCAAGGCCGCACCATCGAC
TTCTGCAACGCCGTGATTGTGATGACCAGCAACATTGGCAGCCAGTTCATCCTGGAGATGGGTGAAGAGGAAGCCAGCCT
CGACGCGGTGGAGCTGAAAGTGCTGGGAGCGCTGCGGCAACATTTCCGGCCAGAATTTCTCAACCGGATCGACGACACAA
TCCTGTTCCAACCGCTTTCTCGCGGACAGTTGCAGCAGATTGTGGACATCCAATTGCAGCGGCTCAAACGACTGCTGGCG
GAGCAGGCGATCGCTCTCAACGTCACACCAGCAGCGGCAGCCAATCTGGCCGATCGCGGCTACGACCCCGTCTACGGCGC
ACGCCCCCTGAAGCGGGCAATCCAGCGGCTAATCGAAAATCCCGTCGCTTCACTGATTCTTGAACAGCAATTTGACGCCG
GTGATGCACTGATCGTCGATGTCGATGCCGAGGGACAGCTGCAATTTCAAGTCAGTAAACCCGTTACAGCCACTGTTGTC
GAGCCGGATGACAGCCCTGCGATCGCAGTGGAAGCCATTCCCTCTTAG

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (348-442)

• AAA domain (Cdc48 subfamily) (AAA_2) (608-772)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (21-70)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (103-146)

• ATPase family associated with various cellular activities (AAA) (AAA) (207-342)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (779-857)

3D structure

• AlphaFold DB: O34209

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	45.958	96.76	0.445