Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   SYC_RS01670 Genome accession   NC_006576
Coordinates   371478..372212 (+) Length   244 a.a.
NCBI ID   WP_011242637.1    Uniprot ID   Q31NW2
Organism   Synechococcus elongatus PCC 6301     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 366478..377212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYC_RS01645 (syc0318_d) petC 367316..367855 (+) 540 WP_011242632.1 cytochrome b6-f complex iron-sulfur subunit -
  SYC_RS01650 (syc0319_d) petA 367901..368875 (+) 975 WP_011242633.1 cytochrome f -
  SYC_RS01655 (syc0320_d) lgt 368959..369828 (+) 870 WP_011242634.1 prolipoprotein diacylglyceryl transferase -
  SYC_RS01660 (syc0321_d) cobM 369782..370612 (+) 831 WP_011242635.1 precorrin-4 C(11)-methyltransferase -
  SYC_RS01665 (syc0322_c) - 370581..371450 (-) 870 WP_011242636.1 EamA family transporter -
  SYC_RS01670 (syc0323_d) ysxA/radC 371478..372212 (+) 735 WP_011242637.1 RadC family protein Machinery gene
  SYC_RS01680 (syc0324_c) - 372436..373701 (-) 1266 WP_011377926.1 M16 family metallopeptidase -
  SYC_RS01685 (syc0325_d) - 373878..374624 (+) 747 WP_011242639.1 phycocyanobilin:ferredoxin oxidoreductase -
  SYC_RS01690 (syc0326_d) - 374713..375813 (+) 1101 WP_011242640.1 HlyD family efflux transporter periplasmic adaptor subunit -
  SYC_RS01695 (syc0327_d) devC 375797..376975 (+) 1179 WP_011242641.1 ABC transporter permease DevC -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26275.22 Da        Isoelectric Point: 6.3868

>NTDB_id=24477 SYC_RS01670 WP_011242637.1 371478..372212(+) (ysxA/radC) [Synechococcus elongatus PCC 6301]
MATSGLRVADLPEDERPRERLMRSGASSLSTAELLAILLGTGQGPGGLSAVGLGQLLLSQLGEHQREPLRVLRQITVTEL
MQIPGIGPAKATAIAAAIELGKRIYQTTTSELLPITSPEAAAKALSADLMWAEQERFALLLLDVRHNLLAQRVLTIGTAT
ETLANPREIFREALRLGATRLIVAHNHPSGQVDPSSADLSLTEQLLQLGQALELPVLDHLILGQGHHRSLRDTTGLWQKF
PQGD

Nucleotide


Download         Length: 735 bp        

>NTDB_id=24477 SYC_RS01670 WP_011242637.1 371478..372212(+) (ysxA/radC) [Synechococcus elongatus PCC 6301]
ATGGCGACTTCTGGTTTGCGCGTGGCTGATCTGCCCGAAGATGAGCGACCGCGGGAACGGCTGATGCGATCGGGAGCTAG
CAGCCTCTCGACGGCTGAACTGCTCGCGATCTTGTTAGGAACGGGACAAGGACCGGGTGGATTGTCCGCCGTTGGGCTGG
GTCAACTGCTCCTCAGTCAGCTAGGAGAACACCAACGCGAACCGTTGCGCGTTCTGCGTCAAATTACGGTTACTGAACTG
ATGCAAATTCCTGGAATTGGTCCAGCTAAGGCGACAGCGATCGCTGCTGCGATCGAGTTAGGTAAGCGCATCTATCAAAC
GACGACGAGTGAGTTGCTACCGATCACGTCGCCGGAAGCGGCTGCCAAGGCTCTCAGCGCCGATCTGATGTGGGCGGAGC
AGGAACGCTTTGCCCTGCTGCTGTTGGATGTTCGCCATAACCTCTTGGCCCAACGGGTGCTGACCATCGGGACCGCCACT
GAAACCTTGGCCAATCCCCGCGAAATTTTCCGAGAAGCCCTACGCCTCGGGGCAACTCGCTTGATCGTGGCCCATAACCA
TCCGTCTGGGCAGGTCGATCCCAGCAGTGCCGACCTGAGTTTGACGGAACAACTACTGCAACTCGGGCAAGCGCTGGAGC
TACCCGTGCTCGATCACCTCATTTTGGGCCAAGGACACCATCGCAGCTTGCGCGACACCACAGGGCTTTGGCAGAAATTT
CCACAGGGCGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(115-232)

UPF0758 N-terminal (UPF0758_N)

(9-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31NW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.767

93.033

0.361

Multiple sequence alignment