Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   LBS_RS04690 Genome accession   NZ_CP022709
Coordinates   885800..886099 (-) Length   99 a.a.
NCBI ID   WP_076645268.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0063     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 880800..891099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBS_RS04655 (LBS_04655) - 881431..881889 (-) 459 WP_035145008.1 hypothetical protein -
  LBS_RS04660 (LBS_04660) - 881944..883140 (-) 1197 WP_025016389.1 acetate kinase -
  LBS_RS04665 (LBS_04665) - 883162..884172 (-) 1011 WP_025016388.1 class I SAM-dependent methyltransferase -
  LBS_RS04670 (LBS_04670) - 884296..884634 (-) 339 WP_056947123.1 hypothetical protein -
  LBS_RS04675 (LBS_04675) comGF 884597..885109 (-) 513 WP_025016386.1 competence type IV pilus minor pilin ComGF Machinery gene
  LBS_RS04680 (LBS_04680) comGE 885084..885389 (-) 306 WP_025016385.1 hypothetical protein Machinery gene
  LBS_RS04685 (LBS_04685) comGD 885376..885828 (-) 453 WP_076648209.1 competence type IV pilus minor pilin ComGD Machinery gene
  LBS_RS04690 (LBS_04690) comGC 885800..886099 (-) 300 WP_076645268.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LBS_RS04695 (LBS_04695) comGB 886096..887103 (-) 1008 WP_076648212.1 type II secretion system F family protein Machinery gene
  LBS_RS04700 (LBS_04700) comGA 887096..887986 (-) 891 WP_076648214.1 competence type IV pilus ATPase ComGA Machinery gene
  LBS_RS04705 (LBS_04705) - 888101..888832 (-) 732 WP_011375002.1 YebC/PmpR family DNA-binding transcriptional regulator -
  LBS_RS04710 (LBS_04710) - 888923..889423 (-) 501 WP_016265379.1 VanZ family protein -
  LBS_RS04715 (LBS_04715) - 889520..889894 (+) 375 WP_011375004.1 hypothetical protein -
  LBS_RS04725 (LBS_04725) - 890081..890695 (-) 615 WP_016265380.1 hypothetical protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10980.93 Da        Isoelectric Point: 9.9124

>NTDB_id=241797 LBS_RS04690 WP_076645268.1 885800..886099(-) (comGC) [Latilactobacillus sakei strain WiKim0063]
MKKKRNAFTLIEMVVVLAIIALLILLVAPNLGAQKQRAEKKTDQALVTTLQTQVELASDEIGHEIKSLDELTDKYISKDQ
LKHAKEKGITIEGGTVKQK

Nucleotide


Download         Length: 300 bp        

>NTDB_id=241797 LBS_RS04690 WP_076645268.1 885800..886099(-) (comGC) [Latilactobacillus sakei strain WiKim0063]
ATGAAGAAAAAAAGAAATGCTTTTACACTAATCGAAATGGTAGTTGTTCTTGCCATTATTGCGTTGTTAATCTTATTAGT
TGCACCAAACCTAGGTGCTCAAAAACAGCGCGCGGAGAAGAAAACGGATCAAGCTTTGGTGACGACTTTACAAACGCAAG
TTGAATTAGCTAGCGACGAGATTGGTCATGAAATCAAGAGTTTAGATGAGCTAACGGATAAGTATATTTCAAAAGATCAG
TTAAAGCACGCAAAGGAGAAGGGGATTACAATTGAAGGCGGCACGGTTAAGCAAAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Latilactobacillus sakei subsp. sakei 23K

97.98

100

0.98
  comGC/cglC Streptococcus pneumoniae TIGR4

45.349

86.869

0.394
  comGC/cglC Streptococcus pneumoniae Rx1

45.349

86.869

0.394
  comGC/cglC Streptococcus pneumoniae D39

45.349

86.869

0.394
  comGC/cglC Streptococcus pneumoniae R6

45.349

86.869

0.394
  comGC/cglC Streptococcus mitis NCTC 12261

44.186

86.869

0.384
  comGC/cglC Streptococcus mitis SK321

43.023

86.869

0.374

Multiple sequence alignment