Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LBS_RS04700 Genome accession   NZ_CP022709
Coordinates   887096..887986 (-) Length   296 a.a.
NCBI ID   WP_076648214.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0063     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 882096..892986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBS_RS04665 (LBS_04665) - 883162..884172 (-) 1011 WP_025016388.1 class I SAM-dependent methyltransferase -
  LBS_RS04670 (LBS_04670) - 884296..884634 (-) 339 WP_056947123.1 hypothetical protein -
  LBS_RS04675 (LBS_04675) comGF 884597..885109 (-) 513 WP_025016386.1 competence type IV pilus minor pilin ComGF Machinery gene
  LBS_RS04680 (LBS_04680) comGE 885084..885389 (-) 306 WP_025016385.1 hypothetical protein Machinery gene
  LBS_RS04685 (LBS_04685) comGD 885376..885828 (-) 453 WP_076648209.1 competence type IV pilus minor pilin ComGD Machinery gene
  LBS_RS04690 (LBS_04690) comGC 885800..886099 (-) 300 WP_076645268.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LBS_RS04695 (LBS_04695) comGB 886096..887103 (-) 1008 WP_076648212.1 type II secretion system F family protein Machinery gene
  LBS_RS04700 (LBS_04700) comGA 887096..887986 (-) 891 WP_076648214.1 competence type IV pilus ATPase ComGA Machinery gene
  LBS_RS04705 (LBS_04705) - 888101..888832 (-) 732 WP_011375002.1 YebC/PmpR family DNA-binding transcriptional regulator -
  LBS_RS04710 (LBS_04710) - 888923..889423 (-) 501 WP_016265379.1 VanZ family protein -
  LBS_RS04715 (LBS_04715) - 889520..889894 (+) 375 WP_011375004.1 hypothetical protein -
  LBS_RS04725 (LBS_04725) - 890081..890695 (-) 615 WP_016265380.1 hypothetical protein -
  LBS_RS04730 (LBS_04730) - 890692..891480 (-) 789 WP_061827022.1 hypothetical protein -
  LBS_RS04735 (LBS_04735) - 891494..892549 (-) 1056 WP_129584050.1 hypothetical protein -

Sequence

Protein


Download         Length: 296 a.a.        Molecular weight: 32940.80 Da        Isoelectric Point: 6.4932

>NTDB_id=241799 LBS_RS04700 WP_076648214.1 887096..887986(-) (comGA) [Latilactobacillus sakei strain WiKim0063]
MSTEEKLTTLLKHCAKQRVQDLYFTPTIGGWRLTERRQSDLVTNQELDKPTGTRYLNRLKYMAGMDISETRRAQTGRSEL
QLADQTIYLRLATVGDFLNRESLVIRFIYPIGAIYHCDDQQILAQLTQMSRQAGLILFAGPTGSGKTTSLYHLAQQSMSA
KMVVAIEDPIEIVAPEFLQLQVNDNAGLSYAELLKISLRLRPDTLIIGEIRDLETAQYAVSAALSGHLVLSTIHARSTQG
VVARLLDLGISEMQLRACLTGIAYQSLVTKDDVVQAHYELLTGPDYFSKKEGGCDV

Nucleotide


Download         Length: 891 bp        

>NTDB_id=241799 LBS_RS04700 WP_076648214.1 887096..887986(-) (comGA) [Latilactobacillus sakei strain WiKim0063]
ATGTCAACTGAAGAAAAGCTAACAACTTTATTAAAGCATTGTGCTAAACAACGTGTTCAAGATCTTTATTTTACACCGAC
AATAGGTGGCTGGCGCTTGACGGAACGTCGTCAGAGCGATTTGGTCACCAATCAAGAATTGGATAAACCGACTGGAACGC
GTTATTTAAATCGACTGAAGTATATGGCGGGGATGGATATCAGCGAGACTCGGCGTGCGCAAACCGGCCGCTCGGAATTA
CAGCTAGCCGACCAAACAATTTATTTACGCCTAGCGACGGTCGGGGATTTTTTAAATCGCGAAAGCTTGGTCATTCGGTT
TATCTATCCAATTGGTGCCATCTATCATTGTGATGATCAACAGATCTTGGCGCAATTAACGCAGATGAGTCGACAGGCGG
GCTTAATTCTTTTCGCTGGGCCGACTGGTTCTGGCAAAACGACTAGTCTCTATCATCTGGCCCAACAATCAATGAGTGCC
AAGATGGTGGTTGCTATTGAAGATCCGATTGAAATTGTTGCACCTGAGTTTTTGCAACTGCAGGTCAACGATAATGCGGG
ATTGAGCTACGCCGAGCTATTAAAAATTAGTTTACGACTGCGACCGGATACGCTGATTATCGGTGAGATTCGCGATTTAG
AGACAGCCCAATACGCGGTTTCTGCGGCCTTAAGTGGCCACCTGGTATTGAGTACTATTCACGCTCGGAGTACACAGGGC
GTGGTCGCGCGCTTATTGGATCTGGGGATTTCTGAGATGCAATTGCGGGCCTGTCTAACGGGAATTGCCTACCAATCGTT
GGTGACAAAAGACGACGTTGTGCAAGCCCATTATGAATTATTAACTGGTCCAGATTATTTCTCAAAAAAAGAAGGTGGTT
GCGATGTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(12-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Latilactobacillus sakei subsp. sakei 23K

98.649

100

0.986
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

42.642

89.527

0.382
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

40.876

92.568

0.378
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

42.264

89.527

0.378
  comGA/cglA/cilD Streptococcus pneumoniae R6

42.264

89.527

0.378
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

42.264

89.527

0.378
  comGA/cglA/cilD Streptococcus pneumoniae D39

42.264

89.527

0.378
  comGA Lactococcus lactis subsp. cremoris KW2

37.458

100

0.378
  comYA Streptococcus gordonii str. Challis substr. CH1

40.59

91.554

0.372

Multiple sequence alignment