Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | LBS_RS04695 | Genome accession | NZ_CP022709 |
| Coordinates | 886096..887103 (-) | Length | 335 a.a. |
| NCBI ID | WP_076648212.1 | Uniprot ID | - |
| Organism | Latilactobacillus sakei strain WiKim0063 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 881096..892103
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LBS_RS04655 (LBS_04655) | - | 881431..881889 (-) | 459 | WP_035145008.1 | hypothetical protein | - |
| LBS_RS04660 (LBS_04660) | - | 881944..883140 (-) | 1197 | WP_025016389.1 | acetate kinase | - |
| LBS_RS04665 (LBS_04665) | - | 883162..884172 (-) | 1011 | WP_025016388.1 | class I SAM-dependent methyltransferase | - |
| LBS_RS04670 (LBS_04670) | - | 884296..884634 (-) | 339 | WP_056947123.1 | hypothetical protein | - |
| LBS_RS04675 (LBS_04675) | comGF | 884597..885109 (-) | 513 | WP_025016386.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| LBS_RS04680 (LBS_04680) | comGE | 885084..885389 (-) | 306 | WP_025016385.1 | hypothetical protein | Machinery gene |
| LBS_RS04685 (LBS_04685) | comGD | 885376..885828 (-) | 453 | WP_076648209.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| LBS_RS04690 (LBS_04690) | comGC | 885800..886099 (-) | 300 | WP_076645268.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| LBS_RS04695 (LBS_04695) | comGB | 886096..887103 (-) | 1008 | WP_076648212.1 | type II secretion system F family protein | Machinery gene |
| LBS_RS04700 (LBS_04700) | comGA | 887096..887986 (-) | 891 | WP_076648214.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LBS_RS04705 (LBS_04705) | - | 888101..888832 (-) | 732 | WP_011375002.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| LBS_RS04710 (LBS_04710) | - | 888923..889423 (-) | 501 | WP_016265379.1 | VanZ family protein | - |
| LBS_RS04715 (LBS_04715) | - | 889520..889894 (+) | 375 | WP_011375004.1 | hypothetical protein | - |
| LBS_RS04725 (LBS_04725) | - | 890081..890695 (-) | 615 | WP_016265380.1 | hypothetical protein | - |
| LBS_RS04730 (LBS_04730) | - | 890692..891480 (-) | 789 | WP_061827022.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 38444.37 Da Isoelectric Point: 9.2248
>NTDB_id=241798 LBS_RS04695 WP_076648212.1 886096..887103(-) (comGB) [Latilactobacillus sakei strain WiKim0063]
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVDFPTDYVGQIELTE
LQGNLGQCLWHLGQIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNHVILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS
MYKLRQQAQFYADFLQLLGRLLENGFSLQQAFAFLPIVFPKQRQWLNQVNQALEKGDSLAVSLAHVDFPTDYVGQIELTE
LQGNLGQCLWHLGQIQSIRQKRRREIRGVLAYPLFLLAFLGGLIGLLRHYLLPEIAQITPESNQTGSPLNHVILWGFLLV
LVLLIMGSGLFMVYRRLPVLVRLQKAFKWPIIGRDIQQYYHYCLLFDLSTCLQNGLKLTEICALQKQLQQNTWLVTLVAQ
LEVVLASGQSLDAYLSRSAFFPQSLRLVLAKHNLTQQTTDEITMLANLQYTELQKQLQRKVSWLQPILFILIGLIIICTY
LSILLPLYQTMEGIS
Nucleotide
Download Length: 1008 bp
>NTDB_id=241798 LBS_RS04695 WP_076648212.1 886096..887103(-) (comGB) [Latilactobacillus sakei strain WiKim0063]
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTTTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGTTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGTCAGATTCAAAGTATTCGGCAAAAGCGGCGCCGAGAAATTCG
GGGGGTGCTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAATCACGTCATATTGTGGGGCTTTTTGTTAGTG
CTGGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
ATGTATAAGTTACGACAACAAGCGCAATTTTACGCTGATTTCTTGCAGTTATTGGGGCGGCTATTAGAGAACGGTTTTTC
ATTGCAACAAGCTTTTGCCTTCTTACCGATTGTCTTCCCAAAACAACGACAGTGGTTAAATCAGGTGAATCAAGCCCTTG
AAAAAGGCGACAGTCTAGCAGTCAGTTTAGCGCATGTTGATTTTCCAACTGATTATGTTGGTCAGATTGAACTAACCGAA
TTACAAGGTAATCTCGGGCAATGTTTATGGCATTTAGGTCAGATTCAAAGTATTCGGCAAAAGCGGCGCCGAGAAATTCG
GGGGGTGCTAGCTTATCCGTTATTTCTTTTGGCTTTTTTAGGGGGCTTAATCGGTTTATTACGCCATTATTTATTACCTG
AGATTGCCCAGATAACGCCCGAGTCAAACCAGACAGGCTCGCCGCTTAATCACGTCATATTGTGGGGCTTTTTGTTAGTG
CTGGTCCTTTTGATAATGGGCAGCGGTCTTTTTATGGTTTACCGCCGGTTACCGGTTTTAGTTCGATTACAAAAAGCGTT
CAAGTGGCCAATCATTGGGCGTGATATTCAGCAGTATTATCATTATTGTTTATTATTTGATTTGAGCACTTGTCTGCAAA
ACGGGCTCAAGTTAACAGAAATTTGTGCTTTACAGAAGCAACTGCAACAAAATACATGGCTGGTGACCTTGGTAGCACAA
TTGGAAGTCGTACTCGCTTCAGGGCAATCATTGGATGCTTATCTTAGTCGCTCTGCATTTTTTCCACAGTCGTTACGATT
GGTATTAGCTAAGCATAATCTCACGCAACAGACGACCGATGAGATCACCATGCTAGCTAACCTGCAGTATACGGAACTAC
AGAAGCAATTACAGCGGAAAGTGAGCTGGTTACAACCTATTTTATTTATCTTAATTGGGCTCATTATTATTTGTACGTAT
CTCAGTATTTTATTACCGCTGTATCAAACAATGGAGGGAATTTCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Latilactobacillus sakei subsp. sakei 23K |
98.507 |
100 |
0.985 |