Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   CHF41_RS08910 Genome accession   NZ_CP022680
Coordinates   1850787..1851491 (-) Length   234 a.a.
NCBI ID   WP_119876939.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1845787..1856491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS08895 abc-f 1846654..1848048 (-) 1395 WP_119876936.1 ribosomal protection-like ABC-F family protein -
  CHF41_RS08900 vicX 1848632..1849435 (-) 804 WP_119876937.1 MBL fold metallo-hydrolase Regulator
  CHF41_RS08905 micB 1849442..1850794 (-) 1353 WP_119876938.1 cell wall metabolism sensor histidine kinase VicK Regulator
  CHF41_RS08910 micA 1850787..1851491 (-) 705 WP_119876939.1 response regulator YycF Regulator
  CHF41_RS08915 - 1852119..1852742 (-) 624 WP_119876940.1 TetR/AcrR family transcriptional regulator -
  CHF41_RS08920 - 1852843..1853475 (+) 633 WP_119876941.1 HXXEE domain-containing protein -
  CHF41_RS08925 adhP 1854559..1855575 (+) 1017 WP_119876942.1 alcohol dehydrogenase AdhP -
  CHF41_RS08930 - 1855635..1856003 (-) 369 WP_119876943.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26848.87 Da        Isoelectric Point: 5.1089

>NTDB_id=241590 CHF41_RS08910 WP_119876939.1 1850787..1851491(-) (micA) [Streptococcus respiraculi strain HTS25]
MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALAVFEAEFPDIVILDLMLPEIDGLEVARTIRKTSNVPILMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSELAETHVEIDTTGTPELTIRDLVILPDAFVAKKHGKELELT
HREFELLHHLAKHLGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYIKGND

Nucleotide


Download         Length: 705 bp        

>NTDB_id=241590 CHF41_RS08910 WP_119876939.1 1850787..1851491(-) (micA) [Streptococcus respiraculi strain HTS25]
ATGAAAAAAATCTTGATTGTAGATGATGAAAAGCCGATTTCGGATATTATCAAATTTAATATGACACGGGAGGGTTACGA
GGTGGTAACGGCCTTTGACGGTCGAGAAGCCTTGGCGGTCTTTGAAGCGGAGTTTCCAGACATCGTGATTTTGGACTTGA
TGTTGCCAGAGATTGACGGACTTGAAGTGGCACGCACGATTCGTAAGACCAGCAATGTTCCGATTTTGATGCTGTCTGCA
AAAGACAGTGAGTTTGATAAGGTCATCGGTCTTGAAATTGGGGCTGACGATTATGTGACCAAGCCCTTTTCCAATCGCGA
GTTGCAGGCGCGGGTCAAGGCCTTGTTGCGCCGCAGTGAATTAGCTGAGACCCATGTAGAGATTGATACGACAGGGACTC
CTGAGTTGACCATTCGGGATTTGGTCATTCTTCCAGATGCCTTTGTAGCTAAAAAGCACGGCAAGGAGTTGGAGTTGACC
CACCGCGAATTCGAGTTGCTCCACCATTTGGCTAAGCACTTGGGTCAGGTCATGACGCGGGAGCACTTGCTTGAGACTGT
CTGGGGTTATGATTACTTCGGAGATGTGCGGACGGTGGATGTAACCGTGCGTCGTTTGCGTGAGAAGATTGAAGATACAC
CGAGCCGACCAGAATACATCTTAACACGGCGTGGTGTAGGCTATTATATAAAGGGAAATGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

83.333

100

0.833
  vicR Streptococcus mutans UA159

80.851

100

0.812
  covR Streptococcus salivarius strain HSISS4

43.29

98.718

0.427
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.478

98.291

0.427
  scnR Streptococcus mutans UA159

37.131

100

0.376

Multiple sequence alignment