Detailed information    

insolico Bioinformatically predicted

Overview


Name   micB   Type   Regulator
Locus tag   CHF41_RS08905 Genome accession   NZ_CP022680
Coordinates   1849442..1850794 (-) Length   450 a.a.
NCBI ID   WP_119876938.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1844442..1855794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS08890 pbp2b 1844503..1846578 (-) 2076 WP_162911940.1 penicillin-binding protein PBP2B -
  CHF41_RS08895 abc-f 1846654..1848048 (-) 1395 WP_119876936.1 ribosomal protection-like ABC-F family protein -
  CHF41_RS08900 vicX 1848632..1849435 (-) 804 WP_119876937.1 MBL fold metallo-hydrolase Regulator
  CHF41_RS08905 micB 1849442..1850794 (-) 1353 WP_119876938.1 cell wall metabolism sensor histidine kinase VicK Regulator
  CHF41_RS08910 micA 1850787..1851491 (-) 705 WP_119876939.1 response regulator YycF Regulator
  CHF41_RS08915 - 1852119..1852742 (-) 624 WP_119876940.1 TetR/AcrR family transcriptional regulator -
  CHF41_RS08920 - 1852843..1853475 (+) 633 WP_119876941.1 HXXEE domain-containing protein -
  CHF41_RS08925 adhP 1854559..1855575 (+) 1017 WP_119876942.1 alcohol dehydrogenase AdhP -

Sequence


Protein


Download         Length: 450 a.a.        Molecular weight: 51243.37 Da        Isoelectric Point: 4.6317

>NTDB_id=241589 CHF41_RS08905 WP_119876938.1 1849442..1850794(-) (micB) [Streptococcus respiraculi strain HTS25]
MINQLRYLITTPEFWFVVILIGFVIALTVLLIENHRDNQQIKELNKKVKRLIELDYSDVLDMRGSPEITEMANSLNDLSE
VIRLTHDHLEQEKTRLSSILAYMSDGVMAADRMGRVIVVNETAQKQLGLTSKTTEQRDLLEILGIREDYSFRDLLAQTPE
IVIEHDNENGEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDDGALT
ESVAPSFVKVSLDETNRMMRMISDLLSLSRIDNQVSSADVELINFTAFVTFILNRFDQMKSQQENGKEYTIVRDYQIIPI
WIEIDTDKMTQVMDNILNNAIKYSPDGGKITFSMKTTDTQLIVSISDEGLGIPKADLPRIFDRFYRVDKARSRAQGGTGL
GLAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYSKDMTADEWEDAEEEE

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=241589 CHF41_RS08905 WP_119876938.1 1849442..1850794(-) (micB) [Streptococcus respiraculi strain HTS25]
ATGATTAATCAATTACGGTATTTAATAACGACACCTGAGTTTTGGTTTGTAGTCATCTTGATTGGTTTTGTCATTGCATT
GACAGTCTTACTGATTGAAAATCACCGGGATAATCAGCAAATCAAGGAACTCAATAAAAAGGTCAAACGCTTGATTGAAC
TAGACTACTCAGATGTTCTTGATATGCGGGGCAGTCCTGAAATTACAGAAATGGCGAATTCGCTCAATGATTTGTCAGAA
GTCATTAGGCTGACCCATGATCATTTGGAGCAGGAAAAGACACGTCTGTCTTCGATTCTCGCTTATATGAGTGACGGAGT
AATGGCCGCAGACCGCATGGGTCGGGTTATCGTGGTCAATGAAACCGCGCAAAAGCAGTTGGGACTTACTTCTAAAACAA
CGGAACAGCGGGATTTATTAGAAATCTTGGGCATTCGTGAGGACTACAGTTTTCGGGATTTGCTAGCGCAGACACCTGAA
ATTGTCATCGAACATGATAATGAAAATGGTGAATTTCTGACCTTGCGGGCTAATTTTGCGACTATTCGGAGTGAGAGTGG
TTTGATTTCTGGTCTGGTTGTCGTTTTGCACGATATGACCGAGCAGGCCAAGGAAGAGCGGGAGCGGCGCTTGTTTGTTT
CAAATGTCAGTCACGAGTTGCGGACACCACTGACTTCGGTCAAATCCTATCTGGAAGCCCTTGATGACGGGGCTTTGACC
GAATCCGTCGCACCGAGCTTTGTTAAGGTGTCGCTCGATGAGACCAACCGCATGATGCGGATGATTTCAGACTTGTTGAG
CCTGTCACGTATTGATAATCAAGTCAGTTCAGCGGATGTGGAGTTGATTAACTTTACAGCCTTTGTGACCTTTATCTTAA
ACCGCTTTGATCAGATGAAGAGTCAGCAGGAAAACGGTAAGGAATATACTATTGTCCGTGATTACCAGATTATACCGATT
TGGATTGAAATTGATACGGATAAGATGACCCAGGTCATGGATAATATTTTGAACAATGCCATTAAGTATTCACCAGACGG
TGGGAAAATCACCTTTAGCATGAAAACGACAGATACTCAGTTGATTGTTTCCATTTCTGATGAGGGCTTGGGCATTCCCA
AGGCTGATTTACCACGGATTTTTGACCGCTTTTATCGGGTGGATAAGGCCCGTTCACGGGCGCAAGGTGGTACAGGGCTT
GGTCTTGCCATTGCAAAGGAAATTGTCAAGCAACACAAGGGCTTCATCTGGGCTAAGAGTGAATATGGACATGGTTCCAC
CTTCACCATTGTGCTACCATACAGTAAAGATATGACAGCTGATGAGTGGGAGGATGCAGAAGAGGAAGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

70.252

97.111

0.682

  vicK Streptococcus mutans UA159

69.458

90.222

0.627


Multiple sequence alignment