Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   CHF41_RS06820 Genome accession   NZ_CP022680
Coordinates   1401155..1401829 (+) Length   224 a.a.
NCBI ID   WP_119876573.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1396155..1406829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS06795 pstC 1396795..1397712 (+) 918 WP_119876568.1 phosphate ABC transporter permease subunit PstC -
  CHF41_RS06800 pstA 1397702..1398589 (+) 888 WP_119876569.1 phosphate ABC transporter permease PstA -
  CHF41_RS06805 pstB 1398605..1399408 (+) 804 WP_119876570.1 phosphate ABC transporter ATP-binding protein PstB -
  CHF41_RS06810 pstB 1399421..1400179 (+) 759 WP_119876571.1 phosphate ABC transporter ATP-binding protein PstB -
  CHF41_RS06815 phoU 1400198..1400854 (+) 657 WP_119876572.1 phosphate signaling complex protein PhoU -
  CHF41_RS06820 ciaR 1401155..1401829 (+) 675 WP_119876573.1 response regulator transcription factor Regulator
  CHF41_RS06825 ciaH 1401819..1403198 (+) 1380 WP_119876574.1 sensor histidine kinase Regulator
  CHF41_RS06830 - 1403442..1405208 (+) 1767 WP_119876575.1 flavocytochrome c -
  CHF41_RS06835 - 1405329..1405850 (-) 522 WP_119876576.1 DNA topology modulation protein -
  CHF41_RS06840 rpsT 1405905..1406153 (-) 249 WP_012027069.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25198.86 Da        Isoelectric Point: 4.2650

>NTDB_id=241581 CHF41_RS06820 WP_119876573.1 1401155..1401829(+) (ciaR) [Streptococcus respiraculi strain HTS25]
MIKILLVEDDLSLSNSVFDFLADFADVMQVFDGDEGLYEAESGVYDLILLDLMLPEKDGFQVLKELRAKGITTPVLITTA
KESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNENVLTFGDLSVDLSTNTATVNGSEVELLGKEFDLLIY
FLQNQNVILPKTQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTTFGEQLQTLRSVGYILKNAD

Nucleotide


Download         Length: 675 bp        

>NTDB_id=241581 CHF41_RS06820 WP_119876573.1 1401155..1401829(+) (ciaR) [Streptococcus respiraculi strain HTS25]
ATGATTAAGATATTACTTGTAGAAGATGACTTGAGCTTATCAAATTCCGTATTTGATTTTTTGGCTGATTTTGCAGATGT
CATGCAGGTATTTGACGGTGATGAGGGCCTGTATGAAGCCGAATCAGGGGTCTACGACCTGATTTTGCTGGATTTGATGT
TACCAGAAAAAGACGGCTTCCAAGTTCTCAAGGAATTGCGGGCTAAAGGCATTACGACGCCTGTCCTCATTACAACTGCT
AAGGAAAGTTTGGACGATAAGGGACACGGCTTTGAATTGGGAGCGGATGATTACTTGACTAAGCCCTTTTATCTAGAAGA
GTTGAAAATGCGGATTCAAGCCCTTTTGAAGCGTTCGGGGAAATTCAATGAAAATGTGCTAACGTTTGGCGATTTGTCTG
TTGATCTTTCGACCAATACTGCCACTGTAAATGGTAGCGAAGTCGAATTGCTCGGGAAAGAGTTTGACCTGCTGATTTAT
TTCTTGCAGAATCAGAATGTCATTTTACCAAAGACACAAATTTTTGACCGAATTTGGGGATTTGATAGCGATACGACTAT
TTCGGTTGTAGAGGTCTATGTCTCCAAAATTAGAAAAAAATTGAAAGGGACGACCTTTGGTGAGCAGCTGCAAACTCTCA
GAAGTGTCGGGTATATCTTGAAAAATGCTGATTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-220)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

89.286

100

0.893
  ciaR Streptococcus pneumoniae Rx1

88.341

99.554

0.879
  ciaR Streptococcus pneumoniae D39

88.341

99.554

0.879
  ciaR Streptococcus pneumoniae R6

88.341

99.554

0.879
  ciaR Streptococcus pneumoniae TIGR4

88.341

99.554

0.879
  vicR Streptococcus mutans UA159

36.441

100

0.384
  covR Lactococcus lactis subsp. lactis strain DGCC12653

37.333

100

0.375
  micA Streptococcus pneumoniae Cp1015

35.622

100

0.371

Multiple sequence alignment