Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   CCX84_RS27885 Genome accession   NZ_CP022345
Coordinates   5236667..5237248 (-) Length   193 a.a.
NCBI ID   WP_001049162.1    Uniprot ID   A0A9W5QPC2
Organism   Bacillus thuringiensis strain c25     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5231667..5242248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX84_RS27855 - 5232641..5233099 (+) 459 WP_001190080.1 8-oxo-dGTP diphosphatase -
  CCX84_RS27860 rapZ 5233120..5234001 (+) 882 WP_000138459.1 RNase adapter RapZ -
  CCX84_RS27865 - 5234005..5234958 (+) 954 WP_000712186.1 YvcK family protein -
  CCX84_RS27870 whiA 5235047..5235997 (+) 951 WP_000006560.1 DNA-binding protein WhiA -
  CCX84_RS27875 - 5236021..5236269 (+) 249 WP_000250307.1 HPr family phosphocarrier protein -
  CCX84_RS27885 clpP 5236667..5237248 (-) 582 WP_001049162.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  CCX84_RS27890 - 5237489..5238358 (-) 870 WP_000018924.1 DUF421 domain-containing protein -
  CCX84_RS27895 - 5238379..5238585 (-) 207 WP_000215909.1 DUF1657 domain-containing protein -
  CCX84_RS27900 spoVAE 5238597..5238947 (-) 351 WP_000575919.1 stage V sporulation protein AE -
  CCX84_RS27905 spoVAD 5238944..5239960 (-) 1017 WP_000938972.1 stage V sporulation protein AD -
  CCX84_RS27910 spoVAC 5239961..5240437 (-) 477 WP_000095399.1 stage V sporulation protein AC -
  CCX84_RS27915 - 5240467..5240952 (-) 486 WP_001228546.1 YhcN/YlaJ family sporulation lipoprotein -
  CCX84_RS27920 - 5241046..5241252 (-) 207 WP_000216166.1 DUF1657 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21419.67 Da        Isoelectric Point: 5.0423

>NTDB_id=238564 CCX84_RS27885 WP_001049162.1 5236667..5237248(-) (clpP) [Bacillus thuringiensis strain c25]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=238564 CCX84_RS27885 WP_001049162.1 5236667..5237248(-) (clpP) [Bacillus thuringiensis strain c25]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGTGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATCTACATCAACAGCCCTGGTGGTTCTATCACAGCAGGTATGGCAATCTATGATACA
ATGCAGTTTATTAAGCCACAAGTATCAACAATCTGTATCGGTATGGCAGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGCGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACTGGTCAA
CCACTTGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAAAGCTTTAGAATACGGTTTAATCGA
TAAAATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554

Multiple sequence alignment