Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LFZ47_RS09730 Genome accession   NZ_CP022139
Coordinates   1942957..1943562 (+) Length   201 a.a.
NCBI ID   WP_080226804.1    Uniprot ID   -
Organism   Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1937957..1948562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFZ47_RS09710 (LFZ47_09710) - 1938353..1940113 (-) 1761 WP_080226806.1 AAA family ATPase -
  LFZ47_RS09715 (LFZ47_09715) matP 1940299..1940751 (+) 453 WP_024155071.1 macrodomain Ter protein MatP -
  LFZ47_RS09720 (LFZ47_09720) ompA 1940823..1941875 (-) 1053 WP_080226809.1 porin OmpA -
  LFZ47_RS09725 (LFZ47_09725) sulA 1942231..1942740 (-) 510 WP_080226805.1 SOS-induced cell division inhibitor SulA -
  LFZ47_RS09730 (LFZ47_09730) sxy/tfoX 1942957..1943562 (+) 606 WP_080226804.1 TfoX/Sxy family DNA transformation protein Regulator
  LFZ47_RS09735 (LFZ47_09735) yccS 1943549..1945702 (-) 2154 WP_080226803.1 YccS family putative transporter -
  LFZ47_RS09740 (LFZ47_09740) - 1945721..1946167 (-) 447 WP_080226802.1 YccF domain-containing protein -
  LFZ47_RS09745 (LFZ47_09745) helD 1946290..1948344 (+) 2055 WP_080226801.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23198.95 Da        Isoelectric Point: 9.0103

>NTDB_id=237218 LFZ47_RS09730 WP_080226804.1 1942957..1943562(+) (sxy/tfoX) [Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEQSVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPANRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=237218 LFZ47_RS09730 WP_080226804.1 1942957..1943562(+) (sxy/tfoX) [Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACTGTCTTTGCGATGGTGGCTAACGGCGAGCTTTATCTCCGCGCCTGTG
AGCAAAGCGTACCCTACTGTGTGAAGCATCCACCTGTCTGGCTCACATTTATGAAGTGTGGACGCCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTCAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAGGTTTTGTATGCGCTGGAAGGCGCAATTGTGGGTGTACATGAAGCGGCGCTCCCGGCGAATCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCTCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

77.387

99.005

0.766

Multiple sequence alignment