Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   TT_RS07420 Genome accession   NC_005835
Coordinates   1391457..1392641 (-) Length   394 a.a.
NCBI ID   WP_011173844.1    Uniprot ID   Q72HL9
Organism   Thermus thermophilus HB27     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1386457..1397641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TT_RS07395 (TT_C1463) fabZ 1386682..1387110 (-) 429 WP_011173839.1 3-hydroxyacyl-ACP dehydratase FabZ -
  TT_RS07400 (TT_C1464) - 1387117..1388154 (-) 1038 WP_011173840.1 rod shape-determining protein -
  TT_RS07405 (TT_C1465) rny 1388166..1389890 (-) 1725 WP_011173841.1 ribonuclease Y -
  TT_RS07410 (TT_C1466) recA 1389891..1390913 (-) 1023 WP_011173842.1 recombinase RecA Machinery gene
  TT_RS07415 (TT_C1467) thpR 1390864..1391460 (-) 597 WP_011173843.1 RNA 2',3'-cyclic phosphodiesterase -
  TT_RS07420 (TT_C1468) cinA 1391457..1392641 (-) 1185 WP_011173844.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  TT_RS07425 (TT_C1469) - 1392614..1393390 (-) 777 WP_041443580.1 glycine cleavage system protein T -
  TT_RS07430 (TT_C1470) - 1393430..1394479 (+) 1050 WP_011173846.1 MFS transporter -
  TT_RS07435 (TT_C1471) - 1394484..1395125 (+) 642 WP_041443582.1 HAD family hydrolase -
  TT_RS07440 (TT_C1472) - 1395245..1396363 (+) 1119 WP_011173848.1 Ig-like domain-containing protein -
  TT_RS07445 (TT_C1473) - 1396412..1397488 (-) 1077 WP_041443585.1 enolase C-terminal domain-like protein -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42862.36 Da        Isoelectric Point: 7.0210

>NTDB_id=23676 TT_RS07420 WP_011173844.1 1391457..1392641(-) (cinA) [Thermus thermophilus HB27]
MERAEILGVGTELLYGETLDTNTAEIARSLKPYALKVERTLRVADEVAPLAREVEEAFARARLVVLSGGLGPTPDDVTRE
AVALALGEPLELDEAVLGEIEAFFRARGRAMPEANRKQAMRIPSATWLKNPRGTAPGWWVRKGGKDLVLLPGPPPEWRPM
WQEVLPCLGLPRRPYAERVLKTWGIGESEIVERLGPLFVRGEEVEVGTYPKVHGVEVVVRGREDRVAELAERIKKKLLKE
VWGEGEMTLAEAVKRRMEREGATLSTMESLTGGLLGAEITRVPGASRFYLGGVVSYSVGAKARFGVPQDLLSRTVSAETA
RAMAEAARSLFGSTYALATTGVAGPDPLEGEPPGTVYVALAGPTGAEVRRYRFPGDRETVRLRSVYAALALLVT

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=23676 TT_RS07420 WP_011173844.1 1391457..1392641(-) (cinA) [Thermus thermophilus HB27]
ATGGAGCGGGCAGAGATCCTCGGGGTAGGCACCGAGCTCCTCTACGGGGAGACCCTGGACACCAACACGGCGGAGATCGC
AAGAAGCCTCAAGCCCTACGCCCTCAAGGTGGAGAGGACCCTGAGGGTGGCGGACGAGGTGGCGCCCCTGGCCCGGGAGG
TGGAGGAGGCCTTCGCCCGGGCCAGGCTTGTGGTCCTCTCCGGCGGCCTCGGCCCCACCCCGGACGACGTGACCCGGGAG
GCGGTGGCCCTGGCCTTGGGGGAACCTTTGGAGCTGGACGAGGCCGTGCTTGGGGAGATTGAGGCCTTCTTCCGCGCCCG
GGGCCGGGCCATGCCCGAGGCCAACCGCAAGCAGGCCATGCGGATCCCCTCCGCCACCTGGCTCAAAAACCCCCGGGGCA
CCGCCCCCGGGTGGTGGGTGCGCAAAGGGGGCAAGGACCTGGTCCTCCTCCCCGGGCCCCCTCCCGAGTGGCGCCCCATG
TGGCAGGAGGTCCTGCCCTGCCTGGGCCTGCCGCGAAGGCCCTACGCCGAAAGGGTCTTGAAGACCTGGGGCATCGGGGA
GTCGGAGATCGTGGAGCGGCTTGGCCCCCTCTTCGTCCGGGGGGAGGAGGTGGAGGTGGGCACCTACCCCAAGGTCCACG
GGGTGGAGGTGGTGGTCCGGGGCCGGGAGGACCGGGTGGCGGAGCTCGCCGAGCGGATCAAGAAAAAGCTTCTTAAGGAG
GTCTGGGGCGAGGGGGAGATGACCCTCGCCGAGGCGGTGAAAAGGCGCATGGAGCGGGAGGGGGCCACCCTTTCCACCAT
GGAGAGCCTCACCGGGGGGCTTCTGGGGGCGGAGATCACCCGCGTGCCGGGGGCGAGCCGCTTCTACTTGGGGGGCGTGG
TATCCTACTCCGTAGGGGCCAAGGCCCGCTTCGGGGTGCCTCAGGACCTCCTCTCCCGGACGGTCTCCGCCGAGACCGCC
CGGGCTATGGCGGAGGCGGCGCGGTCCCTCTTCGGGTCCACCTACGCCCTGGCCACCACCGGGGTCGCGGGGCCGGACCC
CCTGGAGGGAGAGCCCCCGGGCACGGTCTACGTGGCCCTGGCGGGCCCCACGGGCGCGGAGGTGCGGCGCTACCGCTTCC
CGGGAGACCGGGAGACCGTGCGCTTAAGAAGCGTCTACGCGGCCTTGGCGCTCCTTGTGACATGA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-234)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-168)

Competence-damaged protein (CinA)

(248-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q72HL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

35.109

100

0.368
  cinA Streptococcus mitis NCTC 12261

35.109

100

0.368
  cinA Streptococcus pneumoniae TIGR4

34.867

100

0.365
  cinA Streptococcus pneumoniae R36A

34.867

100

0.365
  cinA Streptococcus pneumoniae Rx1

34.867

100

0.365
  cinA Streptococcus pneumoniae R6

34.867

100

0.365
  cinA Streptococcus pneumoniae D39

34.625

100

0.363