Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   BCE33L_RS13650 Genome accession   NC_006274
Coordinates   2646633..2647214 (-) Length   193 a.a.
NCBI ID   WP_000991609.1    Uniprot ID   A0A853X8N5
Organism   Bacillus cereus E33L     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2641633..2652214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCE33L_RS13620 (BCE33L2513) - 2641648..2642484 (-) 837 WP_000548335.1 PP2C family serine/threonine-protein phosphatase -
  BCE33L_RS13625 (BCE33L2514) - 2642468..2642959 (-) 492 WP_144405483.1 HIT family protein -
  BCE33L_RS13630 - 2643060..2643227 (-) 168 WP_041184853.1 hypothetical protein -
  BCE33L_RS13635 (BCE33L2515) - 2643525..2644361 (-) 837 WP_001084757.1 ABC transporter permease -
  BCE33L_RS13640 (BCE33L2516) - 2644354..2645559 (-) 1206 WP_000370609.1 quaternary amine ABC transporter ATP-binding protein -
  BCE33L_RS13645 (BCE33L2517) - 2645731..2646588 (+) 858 WP_001227636.1 glycine betaine ABC transporter substrate-binding protein -
  BCE33L_RS13650 (BCE33L2518) clpP 2646633..2647214 (-) 582 WP_000991609.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  BCE33L_RS13655 (BCE33L2519) - 2647236..2647922 (-) 687 WP_000337479.1 RNA polymerase subunit sigma-70 -
  BCE33L_RS13660 (BCE33L2520) - 2648066..2648386 (+) 321 WP_001125394.1 2Fe-2S iron-sulfur cluster-binding protein -
  BCE33L_RS13665 (BCE33L2521) rpiA 2648391..2649053 (+) 663 WP_000364534.1 ribose 5-phosphate isomerase A -
  BCE33L_RS13670 (BCE33L2522) - 2649161..2649595 (+) 435 WP_000555713.1 GNAT family N-acetyltransferase -
  BCE33L_RS13675 (BCE33L2523) - 2649726..2651093 (-) 1368 WP_000795729.1 lytic polysaccharide monooxygenase -
  BCE33L_RS13680 (BCE33L2524) - 2651530..2652048 (-) 519 WP_000720573.1 DNA topology modulation protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21192.49 Da        Isoelectric Point: 5.3394

>NTDB_id=23633 BCE33L_RS13650 WP_000991609.1 2646633..2647214(-) (clpP) [Bacillus cereus E33L]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAKGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=23633 BCE33L_RS13650 WP_000991609.1 2646633..2647214(-) (clpP) [Bacillus cereus E33L]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAGCGTTCCTATGATATATATTCAAGGTTATTAAAAGA
CCGTATTATTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAATTGTTATTTTTAGAAGCAG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCCGGCGGATCAACGACAGCGGGATTTGCTATATTAGATACA
ATGAATTTAATTAAACCTGATGTGCAAACGCTATGTATGGGCTTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGATTTGCACTCCCAAATAGTGAAATTATGATTCATCAGCCACTTGGTGGTGCAAAAGGGCAAGCAA
CAGAAATTGAAATAACAGCAAAAAGGATATTAAAGTTAAAGCATGATATTAATAAAATGATTGCAGAAAAAACGGGGCAA
CCGATTGAAAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCGAAGGCATATGGGATTGTAGA
TGATGTGGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853X8N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.063

98.964

0.674
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.196

97.927

0.658
  clpP Streptococcus pyogenes JRS4

56.085

97.927

0.549
  clpP Streptococcus pyogenes MGAS315

56.085

97.927

0.549
  clpP Streptococcus pneumoniae R6

55.208

99.482

0.549
  clpP Streptococcus pneumoniae TIGR4

55.208

99.482

0.549
  clpP Streptococcus pneumoniae Rx1

55.208

99.482

0.549
  clpP Streptococcus thermophilus LMG 18311

55.208

99.482

0.549
  clpP Streptococcus thermophilus LMD-9

55.208

99.482

0.549
  clpP Streptococcus pneumoniae D39

55.208

99.482

0.549
  clpP Streptococcus mutans UA159

53.968

97.927

0.528
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

97.927

0.508
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.265

97.927

0.492

Multiple sequence alignment