Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | CEP87_RS07820 | Genome accession | NZ_CP022043 |
| Coordinates | 1839898..1841121 (-) | Length | 407 a.a. |
| NCBI ID | WP_011512443.1 | Uniprot ID | Q1QEQ1 |
| Organism | Psychrobacter cryohalolentis strain FDAARGOS_308 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1834898..1846121
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEP87_RS07800 (CEP87_07805) | - | 1836924..1837259 (+) | 336 | WP_011512439.1 | pyrimidine/purine nucleoside phosphorylase | - |
| CEP87_RS07805 (CEP87_07810) | rlmB | 1837464..1838234 (+) | 771 | WP_011512440.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| CEP87_RS07810 (CEP87_07815) | coaE | 1838197..1838889 (-) | 693 | WP_011512441.1 | dephospho-CoA kinase | - |
| CEP87_RS07815 (CEP87_07820) | pilD | 1838973..1839872 (-) | 900 | WP_011512442.1 | prepilin peptidase | Machinery gene |
| CEP87_RS07820 (CEP87_07825) | pilC | 1839898..1841121 (-) | 1224 | WP_011512443.1 | type II secretion system F family protein | Machinery gene |
| CEP87_RS07825 (CEP87_07830) | pilB | 1841359..1843071 (-) | 1713 | WP_011512444.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CEP87_RS07830 (CEP87_07835) | tpiA | 1843469..1844278 (+) | 810 | WP_011512445.1 | triose-phosphate isomerase | - |
| CEP87_RS07835 (CEP87_07840) | secG | 1844507..1844815 (+) | 309 | WP_011512446.1 | preprotein translocase subunit SecG | - |
Sequence
Protein
Download Length: 407 a.a. Molecular weight: 44489.40 Da Isoelectric Point: 9.7800
>NTDB_id=236088 CEP87_RS07820 WP_011512443.1 1839898..1841121(-) (pilC) [Psychrobacter cryohalolentis strain FDAARGOS_308]
MAKAKTDMLLDFVYDGVNRRGQKVKGETTSRSLELAKATLRKQGITVKGIKKKPKPLYTFKKSIKPIDIAIFARQLATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGTFASALRRHPRYFDDLFCSLVDSGEQSGALETMLERVATYKEK
SELLKAKIKKAMKYPIAVVVVAIIVTIILLVKVVPVFADLFSSFGAELPAFTQMVVGMSEWMQAWWFILIVFIGGAIIGF
SEAKKRSKKFRDVLDRAVLKAPIFGNIAYQAVIARFARTLSTTFAAGVPLIDALDSTAGAANNVVFYNAIQQIKNDVSTG
QQLQFSIRSTNLFPSLAIQMVGIGEESGSLEEMLDKVAVYYENEVDNAVDGLTSLMEPLIMAVLGVLVGGLVIAMYLPIF
QMGSVVG
MAKAKTDMLLDFVYDGVNRRGQKVKGETTSRSLELAKATLRKQGITVKGIKKKPKPLYTFKKSIKPIDIAIFARQLATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGTFASALRRHPRYFDDLFCSLVDSGEQSGALETMLERVATYKEK
SELLKAKIKKAMKYPIAVVVVAIIVTIILLVKVVPVFADLFSSFGAELPAFTQMVVGMSEWMQAWWFILIVFIGGAIIGF
SEAKKRSKKFRDVLDRAVLKAPIFGNIAYQAVIARFARTLSTTFAAGVPLIDALDSTAGAANNVVFYNAIQQIKNDVSTG
QQLQFSIRSTNLFPSLAIQMVGIGEESGSLEEMLDKVAVYYENEVDNAVDGLTSLMEPLIMAVLGVLVGGLVIAMYLPIF
QMGSVVG
Nucleotide
Download Length: 1224 bp
>NTDB_id=236088 CEP87_RS07820 WP_011512443.1 1839898..1841121(-) (pilC) [Psychrobacter cryohalolentis strain FDAARGOS_308]
ATGGCAAAAGCTAAGACCGACATGCTGTTAGACTTTGTCTATGATGGGGTAAATCGGCGCGGGCAAAAGGTAAAAGGTGA
GACGACCAGTCGTAGCTTAGAGCTTGCCAAAGCCACGTTGCGCAAACAAGGTATTACGGTTAAAGGTATCAAGAAAAAGC
CAAAACCCTTATACACCTTTAAGAAGTCCATCAAGCCTATCGATATTGCTATTTTTGCACGTCAATTGGCAACTATGATG
AAAGCTGGGGTGCCATTGACTCAATCCTTTGAGATTGTCGCGGACTCTCTAGATAATCCGAGTATGAAAGACTTGGTATT
ACAAATTAAAGCCGATATTGAAGCTGGTGGTACTTTTGCATCGGCATTACGTCGCCATCCCCGCTATTTTGACGATCTTT
TTTGCTCGCTTGTTGATTCTGGCGAGCAGTCAGGTGCGTTAGAAACCATGCTAGAGCGAGTTGCGACTTATAAAGAGAAA
AGCGAGCTGTTAAAAGCTAAAATTAAAAAAGCTATGAAATATCCTATCGCGGTCGTTGTAGTTGCTATTATTGTCACCAT
TATTCTGCTTGTTAAAGTCGTTCCAGTGTTTGCTGATTTATTTAGCTCTTTTGGTGCAGAATTACCTGCTTTTACCCAAA
TGGTCGTAGGTATGTCTGAGTGGATGCAAGCATGGTGGTTCATCTTAATTGTATTTATTGGTGGCGCAATTATCGGCTTT
TCAGAAGCTAAGAAGCGTTCAAAGAAATTTCGTGATGTCTTAGACCGTGCGGTATTAAAAGCCCCAATATTTGGCAATAT
CGCTTACCAAGCGGTGATTGCGCGTTTTGCTCGTACGCTGTCTACAACTTTTGCTGCCGGCGTACCGCTTATTGATGCGC
TCGATTCAACTGCTGGCGCGGCCAATAATGTAGTATTTTATAACGCTATTCAGCAAATCAAAAATGACGTCTCTACGGGA
CAACAATTACAGTTTTCCATACGTTCAACCAATTTATTTCCAAGCCTTGCTATTCAAATGGTAGGTATCGGTGAAGAGTC
TGGTAGCTTAGAAGAGATGCTCGATAAAGTAGCAGTTTATTATGAAAACGAAGTTGATAACGCTGTTGATGGTTTGACCA
GCTTGATGGAGCCGCTTATTATGGCGGTACTTGGCGTATTAGTTGGTGGTTTGGTCATTGCCATGTACTTACCAATCTTC
CAGATGGGCTCAGTAGTAGGTTGA
ATGGCAAAAGCTAAGACCGACATGCTGTTAGACTTTGTCTATGATGGGGTAAATCGGCGCGGGCAAAAGGTAAAAGGTGA
GACGACCAGTCGTAGCTTAGAGCTTGCCAAAGCCACGTTGCGCAAACAAGGTATTACGGTTAAAGGTATCAAGAAAAAGC
CAAAACCCTTATACACCTTTAAGAAGTCCATCAAGCCTATCGATATTGCTATTTTTGCACGTCAATTGGCAACTATGATG
AAAGCTGGGGTGCCATTGACTCAATCCTTTGAGATTGTCGCGGACTCTCTAGATAATCCGAGTATGAAAGACTTGGTATT
ACAAATTAAAGCCGATATTGAAGCTGGTGGTACTTTTGCATCGGCATTACGTCGCCATCCCCGCTATTTTGACGATCTTT
TTTGCTCGCTTGTTGATTCTGGCGAGCAGTCAGGTGCGTTAGAAACCATGCTAGAGCGAGTTGCGACTTATAAAGAGAAA
AGCGAGCTGTTAAAAGCTAAAATTAAAAAAGCTATGAAATATCCTATCGCGGTCGTTGTAGTTGCTATTATTGTCACCAT
TATTCTGCTTGTTAAAGTCGTTCCAGTGTTTGCTGATTTATTTAGCTCTTTTGGTGCAGAATTACCTGCTTTTACCCAAA
TGGTCGTAGGTATGTCTGAGTGGATGCAAGCATGGTGGTTCATCTTAATTGTATTTATTGGTGGCGCAATTATCGGCTTT
TCAGAAGCTAAGAAGCGTTCAAAGAAATTTCGTGATGTCTTAGACCGTGCGGTATTAAAAGCCCCAATATTTGGCAATAT
CGCTTACCAAGCGGTGATTGCGCGTTTTGCTCGTACGCTGTCTACAACTTTTGCTGCCGGCGTACCGCTTATTGATGCGC
TCGATTCAACTGCTGGCGCGGCCAATAATGTAGTATTTTATAACGCTATTCAGCAAATCAAAAATGACGTCTCTACGGGA
CAACAATTACAGTTTTCCATACGTTCAACCAATTTATTTCCAAGCCTTGCTATTCAAATGGTAGGTATCGGTGAAGAGTC
TGGTAGCTTAGAAGAGATGCTCGATAAAGTAGCAGTTTATTATGAAAACGAAGTTGATAACGCTGTTGATGGTTTGACCA
GCTTGATGGAGCCGCTTATTATGGCGGTACTTGGCGTATTAGTTGGTGGTTTGGTCATTGCCATGTACTTACCAATCTTC
CAGATGGGCTCAGTAGTAGGTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Acinetobacter baumannii D1279779 |
70.098 |
100 |
0.703 |
| pilC | Acinetobacter baylyi ADP1 |
69.118 |
100 |
0.693 |
| pilC | Pseudomonas stutzeri DSM 10701 |
64.557 |
97.052 |
0.627 |
| pilC | Legionella pneumophila strain ERS1305867 |
56.14 |
98.034 |
0.55 |
| pilC | Vibrio cholerae strain A1552 |
43.627 |
100 |
0.437 |
| pilG | Neisseria gonorrhoeae MS11 |
43.182 |
97.297 |
0.42 |
| pilG | Neisseria meningitidis 44/76-A |
42.929 |
97.297 |
0.418 |
| pilC | Vibrio campbellii strain DS40M4 |
42.145 |
98.526 |
0.415 |