Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   TRNA_RS40620 Genome accession   NC_006270
Coordinates   3711485..3712057 (-) Length   190 a.a.
NCBI ID   WP_003185937.1    Uniprot ID   A0A415J8E4
Organism   Bacillus licheniformis DSM 13 = ATCC 14580     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3706485..3717057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TRNA_RS40595 (BL02504) - 3706810..3707217 (-) 408 WP_003185927.1 CBS domain-containing protein -
  TRNA_RS40600 (BL02505) - 3707280..3708236 (-) 957 WP_003185929.1 magnesium transporter CorA family protein -
  TRNA_RS40605 (BL02455) - 3708397..3709695 (+) 1299 WP_003185931.1 hemolysin family protein -
  TRNA_RS40610 (BL02456) - 3709856..3711067 (+) 1212 WP_003185933.1 ammonium transporter -
  TRNA_RS40615 (BL02457) - 3711086..3711436 (+) 351 WP_003185936.1 P-II family nitrogen regulator -
  TRNA_RS40620 (BL05355) clpP 3711485..3712057 (-) 573 WP_003185937.1 ATP-dependent Clp protease proteolytic subunit Regulator
  TRNA_RS40625 (BL04030) - 3712071..3712676 (-) 606 WP_011198380.1 RNA polymerase sigma factor -
  TRNA_RS40630 (BL04028) - 3712813..3713688 (-) 876 WP_003185941.1 M23 family metallopeptidase -
  TRNA_RS40635 (BL04040) - 3713881..3714378 (+) 498 WP_011198381.1 GNAT family N-acetyltransferase -
  TRNA_RS40640 (BL04027) - 3714426..3714869 (-) 444 WP_009329719.1 YwnF family protein -
  TRNA_RS40645 (BL04039) cls 3715119..3716567 (+) 1449 WP_025806104.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21049.23 Da        Isoelectric Point: 5.3785

>NTDB_id=23603 TRNA_RS40620 WP_003185937.1 3711485..3712057(-) (clpP) [Bacillus licheniformis DSM 13 = ATCC 14580]
MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFNDDLANRVTAQLLFLSAEDNEKDISIYINSPGGSTSAGYAILDT
MDYVKPDVRTICVGMAASMGAILLAGGAKGKRYALKNSEIMIHQPLGGVKGQATDMEISAKRIIKLREKIERFFHERTGQ
PIEKLKADMERDYFMDADEAKAYGVIDAVL

Nucleotide


Download         Length: 573 bp        

>NTDB_id=23603 TRNA_RS40620 WP_003185937.1 3711485..3712057(-) (clpP) [Bacillus licheniformis DSM 13 = ATCC 14580]
ATGAACACCATTCCTTACGTCATTGAGAAAACGGCTGCCGGTGAAAGATCGTACGATATTTTTTCCAGACTTTTAAAAGA
CCGGATCATTATGATCGGTTCTGAATTCAACGATGACCTCGCCAATCGGGTCACCGCCCAATTGCTGTTTTTGTCAGCTG
AAGACAATGAAAAAGACATTTCGATCTATATCAACAGCCCGGGCGGATCAACTTCCGCGGGATATGCAATTTTGGATACG
ATGGATTATGTGAAGCCTGATGTCCGCACGATATGCGTCGGAATGGCCGCTTCCATGGGAGCGATTCTCCTCGCCGGCGG
AGCAAAAGGCAAACGGTATGCACTCAAAAACAGCGAAATCATGATCCATCAGCCGCTCGGCGGCGTCAAAGGACAGGCGA
CAGACATGGAGATTTCAGCGAAGCGGATCATCAAACTGAGGGAAAAAATCGAGCGCTTCTTTCACGAACGAACGGGCCAG
CCCATTGAAAAACTAAAAGCCGACATGGAACGCGATTACTTTATGGATGCGGACGAAGCGAAGGCATACGGTGTTATTGA
TGCTGTTTTGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J8E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

65.263

100

0.653
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.567

98.421

0.616
  clpP Streptococcus thermophilus LMD-9

55.556

99.474

0.553
  clpP Streptococcus pneumoniae Rx1

55.556

99.474

0.553
  clpP Streptococcus pneumoniae D39

55.556

99.474

0.553
  clpP Streptococcus thermophilus LMG 18311

55.556

99.474

0.553
  clpP Streptococcus pneumoniae R6

55.556

99.474

0.553
  clpP Streptococcus pneumoniae TIGR4

55.556

99.474

0.553
  clpP Streptococcus mutans UA159

55.026

99.474

0.547
  clpP Streptococcus pyogenes JRS4

54.497

99.474

0.542
  clpP Streptococcus pyogenes MGAS315

54.497

99.474

0.542
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

99.474

0.516
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.323

99.474

0.511

Multiple sequence alignment