Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   S101395_RS03450 Genome accession   NZ_CP021920
Coordinates   666820..667416 (-) Length   198 a.a.
NCBI ID   WP_006639184.1    Uniprot ID   M5PBT9
Organism   Bacillus sonorensis strain SRCM101395     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 661820..672416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101395_RS03420 (S101395_00688) - 661878..662471 (+) 594 WP_006639190.1 beta-class carbonic anhydrase -
  S101395_RS03425 (S101395_00689) - 662495..664114 (+) 1620 WP_006639189.1 SulP family inorganic anion transporter -
  S101395_RS03430 (S101395_00690) - 664159..665136 (-) 978 WP_006639188.1 HD domain-containing protein -
  S101395_RS03435 (S101395_00691) - 665126..665455 (-) 330 WP_006639187.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  S101395_RS03440 (S101395_00692) - 665566..666141 (+) 576 WP_006639186.1 TIGR00730 family Rossman fold protein -
  S101395_RS03445 (S101395_00693) - 666170..666775 (+) 606 WP_006639185.1 DJ-1/PfpI family protein -
  S101395_RS03450 (S101395_00694) clpP 666820..667416 (-) 597 WP_006639184.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  S101395_RS03460 (S101395_00696) - 667818..668249 (-) 432 WP_006639183.1 SMI1/KNR4 family protein -
  S101395_RS03465 (S101395_00697) - 668283..668711 (-) 429 WP_006639182.1 hypothetical protein -
  S101395_RS26080 - 668862..669338 (+) 477 Protein_660 SDR family NAD(P)-dependent oxidoreductase -
  S101395_RS25140 - 669320..669550 (+) 231 WP_006639180.1 hypothetical protein -
  S101395_RS03480 (S101395_00699) - 669652..671190 (-) 1539 WP_051056695.1 glycoside hydrolase family 32 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21834.02 Da        Isoelectric Point: 4.7982

>NTDB_id=234872 S101395_RS03450 WP_006639184.1 666820..667416(-) (clpP) [Bacillus sonorensis strain SRCM101395]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNKILSERTGQ
PLEIIERDTDRDNFKTAEEAKEYGLIDKVLTRNIDAQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=234872 S101395_RS03450 WP_006639184.1 666820..667416(-) (clpP) [Bacillus sonorensis strain SRCM101395]
ATGAATTTAATACCTACAGTCATTGAACAGACGAATCGCGGGGAAAGAGCTTATGACATCTACTCACGCCTGCTGAAAGA
CCGTATCATCATGCTGGGGTCAGCTATCGATGACAATGTTGCGAACTCCATTGTATCACAGCTTTTATTCCTTGAAGCTG
AAGATCCTGAAAAAGATATCAGCATTTACATTAACAGCCCGGGCGGTTCTATTACTGCCGGTATGGCGATCTATGACACG
ATGCAATTTATTAAACCGCAAGTTTCCACAATTTGCACGGGAATGGCGGCGTCCATGGGTGCATTCCTTCTTGCTGCCGG
TGAGAAAGGAAAACGCTATGCCCTTCCAAACAGTGAAGTGATGATTCACCAGCCGCTGGGCGGAGCGCAAGGCCAGGCGA
CTGAAATCGAAATCGCGGCAAAACGTATTCTTTCATTGCGCGACAAACTGAACAAAATCCTTTCTGAACGCACCGGCCAG
CCGCTCGAAATCATCGAGCGCGATACGGACCGCGACAACTTCAAAACAGCTGAAGAAGCCAAAGAATATGGCTTAATCGA
TAAAGTGCTGACGCGCAACATCGATGCGCAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5PBT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

91.371

99.495

0.909
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.708

96.97

0.657
  clpP Streptococcus thermophilus LMG 18311

57.513

97.475

0.561
  clpP Streptococcus thermophilus LMD-9

57.513

97.475

0.561
  clpP Streptococcus pneumoniae TIGR4

56.477

97.475

0.551
  clpP Streptococcus pneumoniae D39

56.477

97.475

0.551
  clpP Lactococcus lactis subsp. cremoris KW2

56.477

97.475

0.551
  clpP Streptococcus pneumoniae Rx1

56.477

97.475

0.551
  clpP Streptococcus pneumoniae R6

56.477

97.475

0.551
  clpP Streptococcus mutans UA159

55.155

97.98

0.54
  clpP Streptococcus pyogenes JRS4

54.922

97.475

0.535
  clpP Streptococcus pyogenes MGAS315

54.922

97.475

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.404

97.475

0.53

Multiple sequence alignment