Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   CDO84_RS16755 Genome accession   NZ_CP021911
Coordinates   3303696..3304286 (+) Length   196 a.a.
NCBI ID   WP_014665471.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3298696..3309286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS16725 (CDO84_16725) aspP 3299675..3301237 (+) 1563 WP_040081739.1 aspartate/proton symporter AspP -
  CDO84_RS16730 (CDO84_16730) - 3301333..3301917 (+) 585 WP_014665467.1 TetR family transcriptional regulator -
  CDO84_RS16735 (CDO84_16735) - 3301999..3302334 (+) 336 WP_014665468.1 QacE family quaternary ammonium compound efflux SMR transporter -
  CDO84_RS16740 (CDO84_16740) - 3302334..3302654 (+) 321 WP_040081738.1 multidrug efflux SMR transporter -
  CDO84_RS16745 (CDO84_16745) - 3302690..3303202 (-) 513 WP_014665470.1 DUF3231 family protein -
  CDO84_RS16755 (CDO84_16755) clpP 3303696..3304286 (+) 591 WP_014665471.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  CDO84_RS16760 (CDO84_16760) pgmB 3304332..3305006 (-) 675 WP_014665472.1 beta-phosphoglucomutase -
  CDO84_RS16765 (CDO84_16765) malL 3305003..3306688 (-) 1686 WP_014665473.1 oligo-1,6-glucosidase -
  CDO84_RS16770 (CDO84_16770) - 3306681..3308954 (-) 2274 WP_040081737.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21553.82 Da        Isoelectric Point: 4.8025

>NTDB_id=234827 CDO84_RS16755 WP_014665471.1 3303696..3304286(+) (clpP) [Bacillus sp. MD-5]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEALEYGLIDKILTHTEDK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=234827 CDO84_RS16755 WP_014665471.1 3303696..3304286(+) (clpP) [Bacillus sp. MD-5]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGCAGCAG
AAGACCCTGAAAAAGAAATTTCTCTTTACATCAACAGCCCGGGCGGCTCTATTACAGCCGGTATGGCGATCTATGATACC
ATGCAGTTTATTAAACCGAAAGTATCTACAATTTGTATCGGTATGGCTGCGTCAATGGGCGCGTTCCTGCTTGCAGCCGG
TGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCTCTTGGCGGTGCGCAAGGTCAAGCGA
CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTCCTTGCTGAACGTACTGGCCAG
CCGCTTGAAGTAATCGAGCGCGACACAGACCGTGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA
CAAAATTTTGACTCACACAGAAGACAAATAG

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

100

100

1
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.617

95.918

0.658
  clpP Streptococcus thermophilus LMG 18311

58.163

100

0.582
  clpP Streptococcus thermophilus LMD-9

58.163

100

0.582
  clpP Streptococcus pneumoniae D39

57.812

97.959

0.566
  clpP Streptococcus pneumoniae Rx1

57.812

97.959

0.566
  clpP Streptococcus pneumoniae R6

57.812

97.959

0.566
  clpP Streptococcus pneumoniae TIGR4

57.812

97.959

0.566
  clpP Lactococcus lactis subsp. cremoris KW2

57.895

96.939

0.561
  clpP Streptococcus pyogenes JRS4

56.122

100

0.561
  clpP Streptococcus pyogenes MGAS315

56.122

100

0.561
  clpP Streptococcus mutans UA159

54.822

100

0.551
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.789

96.939

0.541

Multiple sequence alignment