Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | CDO84_RS11390 | Genome accession | NZ_CP021911 |
| Coordinates | 2286280..2287317 (-) | Length | 345 a.a. |
| NCBI ID | WP_040082638.1 | Uniprot ID | - |
| Organism | Bacillus sp. MD-5 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2281280..2292317
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDO84_RS11340 (CDO84_11340) | tasA | 2281387..2282172 (-) | 786 | WP_014664586.1 | biofilm matrix protein TasA | - |
| CDO84_RS11345 (CDO84_11345) | - | 2282236..2282808 (-) | 573 | WP_014664587.1 | signal peptidase I | - |
| CDO84_RS11350 (CDO84_11350) | tapA | 2282792..2283547 (-) | 756 | WP_014664588.1 | amyloid fiber anchoring/assembly protein TapA | - |
| CDO84_RS11355 (CDO84_11355) | - | 2283819..2284145 (+) | 327 | WP_040082645.1 | YqzG/YhdC family protein | - |
| CDO84_RS11360 (CDO84_11360) | - | 2284186..2284365 (-) | 180 | WP_014480252.1 | YqzE family protein | - |
| CDO84_RS11365 (CDO84_11365) | comGG | 2284437..2284811 (-) | 375 | WP_040082643.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| CDO84_RS11370 (CDO84_11370) | comGF | 2284812..2285192 (-) | 381 | WP_040082642.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| CDO84_RS11375 (CDO84_11375) | comGE | 2285218..2285565 (-) | 348 | WP_040082640.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| CDO84_RS11380 (CDO84_11380) | comGD | 2285549..2285980 (-) | 432 | WP_040082639.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| CDO84_RS11385 (CDO84_11385) | comGC | 2285970..2286266 (-) | 297 | WP_019258890.1 | comG operon protein ComGC | Machinery gene |
| CDO84_RS11390 (CDO84_11390) | comGB | 2286280..2287317 (-) | 1038 | WP_040082638.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| CDO84_RS11395 (CDO84_11395) | comGA | 2287304..2288374 (-) | 1071 | WP_040082636.1 | competence protein ComGA | Machinery gene |
| CDO84_RS21580 (CDO84_11400) | - | 2288337..2288555 (-) | 219 | WP_040082635.1 | hypothetical protein | - |
| CDO84_RS11405 (CDO84_11405) | - | 2288586..2288996 (-) | 411 | WP_040082633.1 | CBS domain-containing protein | - |
| CDO84_RS11410 (CDO84_11410) | corA | 2289059..2290012 (-) | 954 | WP_040082632.1 | magnesium transporter CorA | - |
| CDO84_RS11415 (CDO84_11415) | - | 2290154..2291482 (+) | 1329 | WP_040083766.1 | hemolysin family protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39901.28 Da Isoelectric Point: 9.9053
>NTDB_id=234807 CDO84_RS11390 WP_040082638.1 2286280..2287317(-) (comGB) [Bacillus sp. MD-5]
MKKIRKTWPLKDQARLLKRLGEMTASGYTLLDGLRLMELQMNKRQSADLTDTVTRLREGAPFYQVLKRLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLILFSAGIGIYYGFVFKKKSPARQMLICVRIPFVGKLVRLFNSYFFSLQLSSLLKSGLSIYDSLHAFKHQT
FLPFYRCEAEHVIERLKAGESIEAAICGSPFFETDFSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLLPMYQMMNQM
MKKIRKTWPLKDQARLLKRLGEMTASGYTLLDGLRLMELQMNKRQSADLTDTVTRLREGAPFYQVLKRLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLILFSAGIGIYYGFVFKKKSPARQMLICVRIPFVGKLVRLFNSYFFSLQLSSLLKSGLSIYDSLHAFKHQT
FLPFYRCEAEHVIERLKAGESIEAAICGSPFFETDFSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLLPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=234807 CDO84_RS11390 WP_040082638.1 2286280..2287317(-) (comGB) [Bacillus sp. MD-5]
ATGAAAAAGATTAGAAAAACCTGGCCGTTAAAGGATCAGGCCCGGTTATTAAAGCGGCTCGGAGAAATGACGGCAAGCGG
ATATACACTTCTGGATGGATTGCGCCTGATGGAACTTCAGATGAATAAGAGGCAGTCAGCTGACTTGACTGACACGGTCA
CTCGTTTGAGGGAAGGAGCTCCGTTTTATCAAGTATTAAAGCGTTTGTCATTTCATAAGGAAGCTGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAGCTGCTTGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGGGTGCTGCGCTATCCGCTTTTCCTCATCTTCACCGTTGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAATTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTACTGATTCTTTTTTCAGCTGGTATCGGGATTTATTATGGGTTTGTGTTTAAGAA
AAAATCACCTGCCAGGCAAATGCTTATTTGTGTCAGGATTCCTTTTGTCGGAAAGCTTGTCAGACTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCCATTTATGACAGTCTTCATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCAGAACACGTGATTGAACGGCTAAAAGCCGGTGAATCAATTGAAGCGGCTATTTG
TGGGAGCCCTTTTTTTGAAACTGATTTTTCAAAAGTCATATCCCATGGCCAACTGAGCGGCCGTCTAGATCGTGAGCTTT
TCACATACAGCCAGTTCATATTGCAGCGGCTGGAACATAAAGCGCAAAAATGGACAGGCATCCTTCAGCCGATGATTTAT
GGATTTGTTGCTGCAATGATCTTACTTGTGTATTTATCTATGCTTTTGCCTATGTATCAGATGATGAATCAAATGTGA
ATGAAAAAGATTAGAAAAACCTGGCCGTTAAAGGATCAGGCCCGGTTATTAAAGCGGCTCGGAGAAATGACGGCAAGCGG
ATATACACTTCTGGATGGATTGCGCCTGATGGAACTTCAGATGAATAAGAGGCAGTCAGCTGACTTGACTGACACGGTCA
CTCGTTTGAGGGAAGGAGCTCCGTTTTATCAAGTATTAAAGCGTTTGTCATTTCATAAGGAAGCTGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAGCTGCTTGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGGGTGCTGCGCTATCCGCTTTTCCTCATCTTCACCGTTGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAATTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTACTGATTCTTTTTTCAGCTGGTATCGGGATTTATTATGGGTTTGTGTTTAAGAA
AAAATCACCTGCCAGGCAAATGCTTATTTGTGTCAGGATTCCTTTTGTCGGAAAGCTTGTCAGACTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCCATTTATGACAGTCTTCATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCAGAACACGTGATTGAACGGCTAAAAGCCGGTGAATCAATTGAAGCGGCTATTTG
TGGGAGCCCTTTTTTTGAAACTGATTTTTCAAAAGTCATATCCCATGGCCAACTGAGCGGCCGTCTAGATCGTGAGCTTT
TCACATACAGCCAGTTCATATTGCAGCGGCTGGAACATAAAGCGCAAAAATGGACAGGCATCCTTCAGCCGATGATTTAT
GGATTTGTTGCTGCAATGATCTTACTTGTGTATTTATCTATGCTTTTGCCTATGTATCAGATGATGAATCAAATGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
93.808 |
93.623 |
0.878 |