Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | VP_RS22085 | Genome accession | NC_004605 |
| Coordinates | 1539327..1539983 (-) | Length | 218 a.a. |
| NCBI ID | WP_005462983.1 | Uniprot ID | Q87G71 |
| Organism | Vibrio parahaemolyticus RIMD 2210633 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1534327..1544983
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VP_RS22070 (VPA1443) | - | 1535435..1536775 (-) | 1341 | WP_005462986.1 | HlyD family type I secretion periplasmic adaptor subunit | - |
| VP_RS22075 (VPA1444) | - | 1536750..1538468 (-) | 1719 | WP_005478308.1 | type I secretion system permease/ATPase | - |
| VP_RS22080 (VPA1445) | - | 1538530..1539120 (-) | 591 | WP_005462984.1 | calcium-binding protein | - |
| VP_RS22085 (VPA1446) | qstR | 1539327..1539983 (-) | 657 | WP_005462983.1 | cyclic-di-GMP-binding transcriptional regulator CpsQ | Regulator |
| VP_RS22090 (VPA1447) | - | 1540209..1540880 (-) | 672 | WP_005462981.1 | LuxR C-terminal-related transcriptional regulator | - |
| VP_RS22095 (VPA1448) | - | 1541148..1541348 (-) | 201 | WP_005462979.1 | chromosome segregation ATPase | - |
| VP_RS22100 (VPA1449) | - | 1541405..1543321 (-) | 1917 | WP_005478023.1 | methyl-accepting chemotaxis protein | - |
| VP_RS22105 (VPA1450) | - | 1543637..1544593 (+) | 957 | WP_005462975.1 | MoxR family ATPase | - |
Sequence
Protein
Download Length: 218 a.a. Molecular weight: 25148.87 Da Isoelectric Point: 6.1324
>NTDB_id=23440 VP_RS22085 WP_005462983.1 1539327..1539983(-) (qstR) [Vibrio parahaemolyticus RIMD 2210633]
MRNIMEQYTEKPEILMLTQQSLQSENFKEMLSKNTETKITIIDAKNPSYHELIPDRYFLLVDFSVDTPSDTLVYLKDSNK
VLGTIMLNLGYDLDTEELASWPHVKGIFGPLDSMEKVCRGLGAIVKGDNWLSRRLLDQLVNYYKGKESNNVSEPAIEVEL
TRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKRNL
MRNIMEQYTEKPEILMLTQQSLQSENFKEMLSKNTETKITIIDAKNPSYHELIPDRYFLLVDFSVDTPSDTLVYLKDSNK
VLGTIMLNLGYDLDTEELASWPHVKGIFGPLDSMEKVCRGLGAIVKGDNWLSRRLLDQLVNYYKGKESNNVSEPAIEVEL
TRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKRNL
Nucleotide
Download Length: 657 bp
>NTDB_id=23440 VP_RS22085 WP_005462983.1 1539327..1539983(-) (qstR) [Vibrio parahaemolyticus RIMD 2210633]
ATGAGAAACATTATGGAACAGTACACGGAAAAGCCTGAAATCCTAATGCTCACTCAACAAAGTTTACAGAGTGAAAACTT
TAAGGAAATGCTTTCTAAAAATACAGAAACGAAGATAACAATCATCGATGCTAAAAACCCTAGCTATCATGAACTCATCC
CAGATCGTTACTTTTTATTGGTTGACTTTTCAGTTGATACACCTTCTGACACTTTAGTTTATCTAAAGGATAGCAATAAA
GTGCTAGGTACTATCATGCTTAATCTGGGTTATGACTTAGATACCGAAGAGCTAGCGTCTTGGCCTCATGTCAAAGGCAT
ATTTGGTCCATTGGACTCTATGGAAAAGGTTTGTCGAGGATTAGGGGCCATTGTTAAAGGAGATAATTGGCTATCAAGAA
GATTGTTGGATCAATTGGTAAATTATTACAAAGGAAAAGAATCGAATAACGTTTCAGAGCCTGCAATTGAAGTAGAACTG
ACACGACGCGAAATTCAGGTTCTTAAAATGTTGAAGGAGGGTGGTTCAAATATGGAAATAGCTGACTCACTCTTTATCAG
CGAACATACTATTAAATCGCATCTATACAATATTTTTAGAAAGTTAGAAGTGAAAAATAGGACGCAAGCCACAAGTTGGG
CAAAAAGAAACCTCTAG
ATGAGAAACATTATGGAACAGTACACGGAAAAGCCTGAAATCCTAATGCTCACTCAACAAAGTTTACAGAGTGAAAACTT
TAAGGAAATGCTTTCTAAAAATACAGAAACGAAGATAACAATCATCGATGCTAAAAACCCTAGCTATCATGAACTCATCC
CAGATCGTTACTTTTTATTGGTTGACTTTTCAGTTGATACACCTTCTGACACTTTAGTTTATCTAAAGGATAGCAATAAA
GTGCTAGGTACTATCATGCTTAATCTGGGTTATGACTTAGATACCGAAGAGCTAGCGTCTTGGCCTCATGTCAAAGGCAT
ATTTGGTCCATTGGACTCTATGGAAAAGGTTTGTCGAGGATTAGGGGCCATTGTTAAAGGAGATAATTGGCTATCAAGAA
GATTGTTGGATCAATTGGTAAATTATTACAAAGGAAAAGAATCGAATAACGTTTCAGAGCCTGCAATTGAAGTAGAACTG
ACACGACGCGAAATTCAGGTTCTTAAAATGTTGAAGGAGGGTGGTTCAAATATGGAAATAGCTGACTCACTCTTTATCAG
CGAACATACTATTAAATCGCATCTATACAATATTTTTAGAAAGTTAGAAGTGAAAAATAGGACGCAAGCCACAAGTTGGG
CAAAAAGAAACCTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio campbellii strain DS40M4 |
40.909 |
90.826 |
0.372 |