Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   CCX87_RS18720 Genome accession   NZ_CP021648
Coordinates   4043915..4044457 (-) Length   180 a.a.
NCBI ID   WP_087748043.1    Uniprot ID   -
Organism   Acidovorax sp. T1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4038915..4049457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX87_RS18690 - 4039116..4040672 (-) 1557 WP_087748502.1 M48 family metalloprotease -
  CCX87_RS18695 moaC 4040758..4041243 (+) 486 WP_087748503.1 cyclic pyranopterin monophosphate synthase MoaC -
  CCX87_RS18700 - 4041309..4041923 (+) 615 WP_087748040.1 Uma2 family endonuclease -
  CCX87_RS18705 - 4042088..4042381 (-) 294 WP_087748041.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CCX87_RS18710 - 4042381..4042656 (-) 276 WP_087748042.1 type II toxin-antitoxin system ParD family antitoxin -
  CCX87_RS18715 - 4042986..4043807 (-) 822 WP_232476446.1 hypothetical protein -
  CCX87_RS18720 pilA 4043915..4044457 (-) 543 WP_087748043.1 pilin Machinery gene
  CCX87_RS18725 - 4045068..4046465 (+) 1398 WP_087748044.1 Fic family protein -
  CCX87_RS18730 - 4046513..4046914 (-) 402 WP_087748045.1 type II toxin-antitoxin system VapC family toxin -
  CCX87_RS18735 vapB 4046911..4047144 (-) 234 WP_087748046.1 type II toxin-antitoxin system VapB family antitoxin -
  CCX87_RS18740 - 4047238..4047474 (-) 237 Protein_3728 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  CCX87_RS18745 - 4047471..4048091 (-) 621 WP_087748047.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein -
  CCX87_RS18750 - 4048279..4048545 (-) 267 WP_087748048.1 BrnA antitoxin family protein -
  CCX87_RS18755 - 4048529..4048828 (-) 300 WP_087748049.1 BrnT family toxin -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 17980.93 Da        Isoelectric Point: 8.1036

>NTDB_id=232261 CCX87_RS18720 WP_087748043.1 4043915..4044457(-) (pilA) [Acidovorax sp. T1]
MKRNLQKGFTLIELMIVVAIIGILAAVALPAYQDYTIRAKVSEGLILGSALKATVADNAANAVADASGGLFAGMTTGTAA
APTLCAAAGTCVQTAPTKNIATITGTTANGMIAVAFSTAIAPAASNLLQIWPSSNGALLVAGTPPVGPIVWTCYTDDKAA
ILGATNGATLLSKYAPAECR

Nucleotide


Download         Length: 543 bp        

>NTDB_id=232261 CCX87_RS18720 WP_087748043.1 4043915..4044457(-) (pilA) [Acidovorax sp. T1]
ATGAAGCGTAATCTGCAAAAGGGTTTTACCCTGATCGAATTGATGATCGTTGTGGCGATCATTGGTATTTTGGCGGCTGT
GGCTTTGCCTGCTTATCAGGACTACACAATCCGCGCTAAAGTCTCTGAAGGCCTGATTTTGGGTAGTGCGTTGAAGGCGA
CCGTTGCCGACAATGCAGCTAATGCCGTTGCTGATGCATCCGGTGGTCTGTTTGCTGGTATGACTACAGGCACTGCTGCT
GCGCCCACTTTGTGTGCCGCCGCAGGCACCTGTGTTCAGACAGCTCCCACGAAAAACATCGCAACCATTACCGGTACCAC
TGCCAATGGCATGATTGCCGTTGCGTTTTCGACGGCTATTGCTCCTGCTGCTAGCAACTTGCTGCAAATTTGGCCATCGT
CTAACGGAGCACTGTTGGTTGCAGGCACTCCGCCTGTGGGCCCAATCGTGTGGACTTGCTACACCGATGACAAGGCGGCG
ATCCTTGGTGCAACTAATGGTGCCACGTTGCTCTCCAAGTATGCGCCAGCTGAATGCCGTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(38-180)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

46.774

100

0.483
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

39

100

0.433
  comP Acinetobacter baylyi ADP1

42.458

99.444

0.422
  pilA2 Legionella pneumophila str. Paris

41.143

97.222

0.4
  pilA2 Legionella pneumophila strain ERS1305867

40.449

98.889

0.4
  pilE Neisseria gonorrhoeae MS11

36.264

100

0.367

Multiple sequence alignment