Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | CA928_RS07360 | Genome accession | NZ_CP021264 |
| Coordinates | 1634433..1635653 (+) | Length | 406 a.a. |
| NCBI ID | WP_027221710.1 | Uniprot ID | A0A2S6EZN5 |
| Organism | Legionella pneumophila subsp. fraseri strain D-5387 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1629433..1640653
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA928_RS07340 | - | 1630526..1631095 (-) | 570 | WP_027221706.1 | hypoxanthine-guanine phosphoribosyltransferase | - |
| CA928_RS07345 | - | 1631138..1631464 (-) | 327 | WP_027227020.1 | DUF1820 family protein | - |
| CA928_RS07350 | - | 1631647..1632390 (-) | 744 | WP_027227021.1 | methyltransferase domain-containing protein | - |
| CA928_RS07355 | pilB | 1632703..1634427 (+) | 1725 | WP_027227022.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CA928_RS07360 | pilC | 1634433..1635653 (+) | 1221 | WP_027221710.1 | type II secretion system F family protein | Machinery gene |
| CA928_RS07365 | pilD | 1635699..1636562 (+) | 864 | WP_027227023.1 | A24 family peptidase | Machinery gene |
| CA928_RS07370 | - | 1636576..1637781 (-) | 1206 | WP_027227024.1 | cyclic nucleotide-binding domain-containing protein | - |
| CA928_RS07375 | - | 1637891..1638484 (-) | 594 | WP_027227025.1 | hypothetical protein | - |
| CA928_RS07380 | - | 1638500..1638955 (-) | 456 | WP_027227026.1 | hypothetical protein | - |
| CA928_RS07385 | - | 1639103..1639918 (+) | 816 | WP_027227027.1 | pyruvate, water dikinase regulatory protein | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44641.85 Da Isoelectric Point: 9.6052
>NTDB_id=229297 CA928_RS07360 WP_027221710.1 1634433..1635653(+) (pilC) [Legionella pneumophila subsp. fraseri strain D-5387]
MDKNAPPLLTFHYQGINKAGQKMEGDIQARSLAIAKADLRKQGIVTNKVVKKRKPLLDRKNKKITQADITVFSRQLATMI
ESGIPLVQAFDIVAKGQSNKRLKDLIETIKHDIETGLTLAESLIKHPLYFNELFCNLVDAGEKSGSLDIMLDKVATYKEK
IEIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEFMQAYWYIIFGALGGVVYSF
FYAKNHSLDFAQTIDRVMLKFPVIGPILEKAAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATG
QQMFIAMENTHLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSILGILVGGLVVAMYLPIF
KLGSAV
MDKNAPPLLTFHYQGINKAGQKMEGDIQARSLAIAKADLRKQGIVTNKVVKKRKPLLDRKNKKITQADITVFSRQLATMI
ESGIPLVQAFDIVAKGQSNKRLKDLIETIKHDIETGLTLAESLIKHPLYFNELFCNLVDAGEKSGSLDIMLDKVATYKEK
IEIIKKKIKKALTYPIAVMVVALLVTAGLLIYVVPQFESLFKGFGADLPAMTRAVITMSEFMQAYWYIIFGALGGVVYSF
FYAKNHSLDFAQTIDRVMLKFPVIGPILEKAAIARFARTLSITFAAGLPLVEALKSVAGATGNIIYAKATDKIREEVATG
QQMFIAMENTHLFPNMVIQMVAIGEESGALEKMLSKVADFYEEEVNNAVDALSSLLEPIIMSILGILVGGLVVAMYLPIF
KLGSAV
Nucleotide
Download Length: 1221 bp
>NTDB_id=229297 CA928_RS07360 WP_027221710.1 1634433..1635653(+) (pilC) [Legionella pneumophila subsp. fraseri strain D-5387]
ATGGATAAAAATGCCCCACCTTTATTAACCTTTCATTATCAAGGCATCAATAAAGCTGGTCAAAAAATGGAAGGTGATAT
TCAAGCCAGAAGCTTGGCAATAGCTAAAGCTGATTTGCGTAAACAAGGAATAGTCACTAATAAAGTAGTTAAAAAAAGAA
AACCCTTGTTGGATAGAAAAAATAAAAAAATCACGCAAGCGGATATTACAGTGTTTAGCCGCCAATTAGCTACGATGATA
GAGTCAGGGATACCATTAGTACAAGCGTTTGATATTGTTGCCAAAGGACAAAGTAATAAAAGGCTTAAAGACTTGATAGA
AACAATTAAGCACGATATTGAAACGGGGCTAACGCTAGCAGAATCGTTAATTAAACATCCACTCTATTTTAATGAATTAT
TCTGTAATCTTGTCGATGCAGGTGAAAAATCAGGTTCATTAGATATTATGCTTGACAAGGTTGCAACGTATAAAGAAAAA
ATTGAAATCATAAAAAAGAAAATAAAGAAAGCTTTAACTTACCCAATTGCAGTTATGGTTGTCGCGCTTTTGGTTACTGC
AGGATTGTTAATCTACGTGGTTCCTCAATTTGAATCGCTGTTCAAAGGATTTGGCGCTGATTTGCCAGCGATGACCAGAG
CTGTAATTACTATGTCTGAATTTATGCAGGCCTATTGGTATATTATTTTTGGTGCTTTGGGTGGAGTTGTCTATAGCTTT
TTTTATGCCAAAAATCATTCTTTAGATTTCGCGCAAACCATTGACCGAGTAATGCTAAAGTTTCCTGTGATAGGACCCAT
TTTAGAGAAAGCTGCTATTGCTCGATTTGCGAGGACACTATCTATTACTTTTGCTGCTGGATTACCTTTAGTTGAAGCTT
TGAAATCTGTAGCTGGAGCGACTGGAAATATTATTTATGCCAAGGCAACTGATAAAATAAGAGAGGAAGTTGCCACAGGG
CAGCAAATGTTTATTGCTATGGAAAATACCCATTTATTCCCAAATATGGTAATTCAAATGGTAGCAATTGGTGAGGAATC
AGGTGCCCTTGAGAAAATGTTAAGCAAGGTTGCTGATTTTTATGAGGAAGAAGTAAATAATGCTGTAGATGCTCTGAGTA
GTTTATTGGAGCCTATAATTATGTCAATATTAGGCATCCTTGTTGGGGGATTGGTCGTGGCTATGTATTTGCCTATCTTC
AAACTGGGCTCTGCTGTTTAA
ATGGATAAAAATGCCCCACCTTTATTAACCTTTCATTATCAAGGCATCAATAAAGCTGGTCAAAAAATGGAAGGTGATAT
TCAAGCCAGAAGCTTGGCAATAGCTAAAGCTGATTTGCGTAAACAAGGAATAGTCACTAATAAAGTAGTTAAAAAAAGAA
AACCCTTGTTGGATAGAAAAAATAAAAAAATCACGCAAGCGGATATTACAGTGTTTAGCCGCCAATTAGCTACGATGATA
GAGTCAGGGATACCATTAGTACAAGCGTTTGATATTGTTGCCAAAGGACAAAGTAATAAAAGGCTTAAAGACTTGATAGA
AACAATTAAGCACGATATTGAAACGGGGCTAACGCTAGCAGAATCGTTAATTAAACATCCACTCTATTTTAATGAATTAT
TCTGTAATCTTGTCGATGCAGGTGAAAAATCAGGTTCATTAGATATTATGCTTGACAAGGTTGCAACGTATAAAGAAAAA
ATTGAAATCATAAAAAAGAAAATAAAGAAAGCTTTAACTTACCCAATTGCAGTTATGGTTGTCGCGCTTTTGGTTACTGC
AGGATTGTTAATCTACGTGGTTCCTCAATTTGAATCGCTGTTCAAAGGATTTGGCGCTGATTTGCCAGCGATGACCAGAG
CTGTAATTACTATGTCTGAATTTATGCAGGCCTATTGGTATATTATTTTTGGTGCTTTGGGTGGAGTTGTCTATAGCTTT
TTTTATGCCAAAAATCATTCTTTAGATTTCGCGCAAACCATTGACCGAGTAATGCTAAAGTTTCCTGTGATAGGACCCAT
TTTAGAGAAAGCTGCTATTGCTCGATTTGCGAGGACACTATCTATTACTTTTGCTGCTGGATTACCTTTAGTTGAAGCTT
TGAAATCTGTAGCTGGAGCGACTGGAAATATTATTTATGCCAAGGCAACTGATAAAATAAGAGAGGAAGTTGCCACAGGG
CAGCAAATGTTTATTGCTATGGAAAATACCCATTTATTCCCAAATATGGTAATTCAAATGGTAGCAATTGGTGAGGAATC
AGGTGCCCTTGAGAAAATGTTAAGCAAGGTTGCTGATTTTTATGAGGAAGAAGTAAATAATGCTGTAGATGCTCTGAGTA
GTTTATTGGAGCCTATAATTATGTCAATATTAGGCATCCTTGTTGGGGGATTGGTCGTGGCTATGTATTTGCCTATCTTC
AAACTGGGCTCTGCTGTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
99.015 |
100 |
0.99 |
| pilC | Acinetobacter baumannii D1279779 |
54.074 |
99.754 |
0.539 |
| pilC | Pseudomonas stutzeri DSM 10701 |
54.293 |
97.537 |
0.53 |
| pilC | Acinetobacter baylyi ADP1 |
53.401 |
97.783 |
0.522 |
| pilG | Neisseria meningitidis 44/76-A |
45.088 |
97.783 |
0.441 |
| pilG | Neisseria gonorrhoeae MS11 |
44.836 |
97.783 |
0.438 |
| pilC | Vibrio cholerae strain A1552 |
42.5 |
98.522 |
0.419 |
| pilC | Vibrio campbellii strain DS40M4 |
39.409 |
100 |
0.394 |