Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CA934_RS04435 Genome accession   NZ_CP021259
Coordinates   971661..971978 (+) Length   105 a.a.
NCBI ID   WP_027221169.1    Uniprot ID   A0AAN5Q743
Organism   Legionella pneumophila strain D-7708     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 966661..976978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA934_RS04415 - 966813..968252 (+) 1440 WP_106224959.1 cation:proton antiporter -
  CA934_RS04420 nadC 968249..969091 (+) 843 WP_106224960.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CA934_RS04425 - 969088..970179 (+) 1092 WP_106224961.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  CA934_RS04430 - 970154..971569 (+) 1416 WP_106224962.1 M20 family metallopeptidase -
  CA934_RS04435 comEA 971661..971978 (+) 318 WP_027221169.1 helix-hairpin-helix domain-containing protein Machinery gene
  CA934_RS04440 - 972174..973211 (+) 1038 WP_011213320.1 rod shape-determining protein -
  CA934_RS04445 mreC 973189..974097 (+) 909 WP_106224963.1 rod shape-determining protein MreC -
  CA934_RS04450 mreD 974094..974573 (+) 480 WP_106224964.1 rod shape-determining protein MreD -
  CA934_RS04455 - 974509..975111 (-) 603 WP_192877328.1 pseudouridine synthase -
  CA934_RS04460 - 975286..975984 (+) 699 WP_028377915.1 hypothetical protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11745.77 Da        Isoelectric Point: 10.6194

>NTDB_id=229162 CA934_RS04435 WP_027221169.1 971661..971978(+) (comEA) [Legionella pneumophila strain D-7708]
MKARLIAIFLSFIVIPLSSHAENEPQKIPAKQVIVKGKINLNTADVNSLTGSFKGIGKKRAEAIIAYRENHQGFKSLEEL
AEVKGIGQRFVDKNREKLKEIFVIN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=229162 CA934_RS04435 WP_027221169.1 971661..971978(+) (comEA) [Legionella pneumophila strain D-7708]
ATGAAAGCAAGACTCATTGCTATTTTTTTGTCATTTATTGTTATCCCTCTCTCTTCTCATGCTGAGAACGAGCCTCAAAA
AATACCGGCTAAACAAGTCATTGTTAAGGGTAAAATTAACCTTAATACAGCGGATGTTAATTCTTTAACAGGCTCTTTTA
AGGGGATAGGAAAAAAACGGGCTGAAGCTATCATTGCTTATAGAGAAAATCATCAAGGTTTTAAATCTCTGGAAGAACTT
GCTGAAGTCAAGGGTATTGGACAGCGTTTTGTAGATAAAAATAGAGAAAAATTGAAAGAAATTTTCGTTATTAATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Legionella pneumophila str. Paris

94.286

100

0.943
  comEA Legionella pneumophila strain ERS1305867

94.286

100

0.943
  comE1/comEA Haemophilus influenzae Rd KW20

35.455

100

0.371
  comEA Vibrio cholerae C6706

37.864

98.095

0.371
  comEA Vibrio cholerae strain A1552

37.864

98.095

0.371
  comEA Staphylococcus aureus N315

38.384

94.286

0.362
  comEA Staphylococcus aureus MW2

38.384

94.286

0.362

Multiple sequence alignment