Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CAB88_RS28820 Genome accession   NZ_CP021061
Coordinates   5381500..5381784 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain ATCC 10792     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5376500..5386784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAB88_RS28785 (CAB88_28755) tmk 5376692..5377318 (+) 627 WP_000677220.1 dTMP kinase -
  CAB88_RS28790 (CAB88_28760) holB 5377354..5378337 (+) 984 WP_000978578.1 DNA polymerase III subunit delta' -
  CAB88_RS28795 (CAB88_28765) - 5378343..5379170 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  CAB88_RS28800 (CAB88_28770) yabA 5379185..5379535 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  CAB88_RS28805 (CAB88_28775) - 5379618..5380358 (+) 741 WP_001055355.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CAB88_RS28810 (CAB88_28780) - 5380345..5380635 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  CAB88_RS28815 (CAB88_28785) rsmI 5380604..5381479 (+) 876 WP_000267825.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CAB88_RS28820 (CAB88_28790) abrB 5381500..5381784 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CAB88_RS28825 (CAB88_28795) metG 5382272..5384254 (+) 1983 WP_000134129.1 methionine--tRNA ligase -
  CAB88_RS28830 (CAB88_28800) - 5384421..5385188 (+) 768 WP_000895840.1 TatD family hydrolase -
  CAB88_RS28835 (CAB88_28805) rnmV 5385404..5385961 (+) 558 WP_000692837.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=228098 CAB88_RS28820 WP_000843036.1 5381500..5381784(-) (abrB) [Bacillus thuringiensis strain ATCC 10792]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=228098 CAB88_RS28820 WP_000843036.1 5381500..5381784(-) (abrB) [Bacillus thuringiensis strain ATCC 10792]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment