Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SPYM3_RS07125 Genome accession   NC_004070
Coordinates   1361189..1361854 (-) Length   221 a.a.
NCBI ID   WP_011054828.1    Uniprot ID   A0A0H2UVR9
Organism   Streptococcus pyogenes MGAS315     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1356189..1366854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYM3_RS07120 (SpyM3_1358) hpf 1360561..1361109 (-) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SPYM3_RS07125 (SpyM3_1359) comFC/cflB 1361189..1361854 (-) 666 WP_011054828.1 ComF family protein Machinery gene
  SPYM3_RS07130 (SpyM3_1361) - 1361826..1363150 (-) 1325 Protein_1378 DEAD/DEAH box helicase -
  SPYM3_RS07135 (SpyM3_1362) - 1363205..1363837 (+) 633 WP_011106658.1 YigZ family protein -
  SPYM3_RS07140 (SpyM3_1363) cysK 1363965..1364906 (+) 942 WP_002991877.1 cysteine synthase A -
  SPYM3_RS07145 (SpyM3_1364) - 1364924..1365301 (-) 378 WP_002991882.1 S1 RNA-binding domain-containing protein -
  SPYM3_RS07150 (SpyM3_1365) - 1365301..1366701 (-) 1401 WP_011054832.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25133.39 Da        Isoelectric Point: 9.4626

>NTDB_id=22807 SPYM3_RS07125 WP_011054828.1 1361189..1361854(-) (comFC/cflB) [Streptococcus pyogenes MGAS315]
MICLLCQQISQTPIGITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=22807 SPYM3_RS07125 WP_011054828.1 1361189..1361854(-) (comFC/cflB) [Streptococcus pyogenes MGAS315]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAGGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATCACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UVR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412

Multiple sequence alignment