Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   XppCFBP6164P_RS16260 Genome accession   NZ_CP020967
Coordinates   3756462..3757718 (+) Length   418 a.a.
NCBI ID   WP_039573972.1    Uniprot ID   A0A3Q9Q1T7
Organism   Xanthomonas phaseoli pv. phaseoli strain CFBP6164     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3751462..3762718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XppCFBP6164P_RS16235 (XppCFBP6164P_05240) - 3751600..3751719 (-) 120 WP_039568289.1 hypothetical protein -
  XppCFBP6164P_RS16240 (XppCFBP6164P_05245) pilB 3751964..3753673 (-) 1710 WP_180959844.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XppCFBP6164P_RS16245 (XppCFBP6164P_05250) - 3753765..3754220 (-) 456 WP_039568290.1 pilin -
  XppCFBP6164P_RS16250 (XppCFBP6164P_05255) pilA 3754330..3754770 (-) 441 WP_039568292.1 pilin Machinery gene
  XppCFBP6164P_RS16255 (XppCFBP6164P_05260) - 3755064..3756290 (-) 1227 WP_011345585.1 IS256-like element ISXax1 family transposase -
  XppCFBP6164P_RS16260 (XppCFBP6164P_05265) pilC 3756462..3757718 (+) 1257 WP_039573972.1 type II secretion system F family protein Machinery gene
  XppCFBP6164P_RS16265 (XppCFBP6164P_05270) - 3757725..3758588 (+) 864 WP_039573976.1 A24 family peptidase -
  XppCFBP6164P_RS16270 (XppCFBP6164P_05275) coaE 3758599..3759210 (+) 612 WP_007962470.1 dephospho-CoA kinase -
  XppCFBP6164P_RS16275 (XppCFBP6164P_24560) - 3759392..3760462 (+) 1071 WP_157926032.1 RHS repeat domain-containing protein -
  XppCFBP6164P_RS16280 (XppCFBP6164P_05280) - 3760511..3761598 (+) 1088 WP_087944778.1 IS3-like element ISXac2 family transposase -
  XppCFBP6164P_RS16285 (XppCFBP6164P_05285) - 3761636..3761875 (+) 240 Protein_3200 SymE family type I addiction module toxin -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45411.79 Da        Isoelectric Point: 10.2788

>NTDB_id=227552 XppCFBP6164P_RS16260 WP_039573972.1 3756462..3757718(+) (pilC) [Xanthomonas phaseoli pv. phaseoli strain CFBP6164]
MSAVRNAVKTKTAAPAEQMSPFIWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLVVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENLEALKGKIKKALFYPAMVMAVAMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM
LFALIGAAIGSVFAYKRSPAMQHGMDRLVLKAPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VLRMREDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=227552 XppCFBP6164P_RS16260 WP_039573972.1 3756462..3757718(+) (pilC) [Xanthomonas phaseoli pv. phaseoli strain CFBP6164]
ATGTCAGCAGTACGTAACGCAGTCAAGACGAAGACCGCCGCACCGGCGGAGCAGATGAGCCCGTTTATCTGGGAGGGAAC
AGACAAGCGCGGCGTCAAGATGAAAGGCGAACAAACGGCCCGCAATGCAAATCTGCTGCGTGCCGAGCTGCGACGCCAGG
GCATTACCCCCCTCGTTGTGAAAGTTAAGCCGAAGCCACTATTCGGCGCTGCAGGAAAGAAGGTCTCCGCAAAAGACATT
TCATTTTTCAGCCGACAGATGGCAACCATGATGAAATCGGGCGTGCCGATTGTCGGCGCGCTAGAGATCATTGGTAGCGG
CCAGAAAAATCCGCGCATGCGCACAATGGTTGGCCAGATCAGGACAGATATCGAAGGCGGGGCATCGCTTTACGAAGCCG
TAAGCAAGCACCCGGTGCAATTTGATGAGCTCTATCGGAATTTGGTCAAAGCAGGCGAAGGCGCAGGCGTACTGGAAACT
GTGCTCGACACCGTCGCCACTTACAAAGAGAACCTTGAAGCCCTAAAAGGCAAGATCAAGAAGGCCCTGTTCTACCCTGC
CATGGTAATGGCGGTGGCGATGTTGGTCAGTGCAATCCTGCTTGTTTGGGTGGTCCCCCAATTTGAAGATGTCTTCAAAG
GCTTTGGCGCTGAGCTGCCTGCTTTCACACAGATGATCGTCAACCTGTCTCGCTTTATGGTGTCTTGGTGGTGGCTGATG
CTGTTCGCACTTATTGGCGCTGCAATCGGTTCTGTTTTCGCGTACAAACGTTCACCAGCAATGCAACATGGCATGGACCG
TTTAGTGCTAAAAGCGCCAATCATTGGCCAGATCATGCATAACAGCTCAATTGCAAGATTCGCCCGGACAACGGCGGTTA
CATTCAAGGCCGGCGTACCGCTAGTCGAGGCGCTGGGCATCGTGGCCGGTGCTACAGGCAACTCGGTCTACGAAAAAGCA
GTACTGCGCATGCGCGAAGACGTCTCGGTGGGCTACCCGGTCAACGTAGCGATGAAACAGGTCAACCTGTTTCCGCACAT
GGTGGTGCAGATGACCGCCATCGGCGAAGAAGCGGGCGCGCTGGATGCCATGTTGTTCAAGGTGGCTGAGTATTTCGAGC
AGGAAGTCAACAACGCGGTCGATGCGCTCAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCCTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9Q1T7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.696

97.608

0.514
  pilC Pseudomonas stutzeri DSM 10701

52.593

96.89

0.51
  pilC Acinetobacter baumannii D1279779

51.613

96.411

0.498
  pilC Legionella pneumophila strain ERS1305867

52.525

94.737

0.498
  pilG Neisseria meningitidis 44/76-A

43.21

96.89

0.419
  pilG Neisseria gonorrhoeae MS11

43.069

96.651

0.416
  pilC Vibrio cholerae strain A1552

41.814

94.976

0.397
  pilC Vibrio campbellii strain DS40M4

39.706

97.608

0.388

Multiple sequence alignment