Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   XppCFBP412P_RS15905 Genome accession   NZ_CP020964
Coordinates   3694280..3695536 (+) Length   418 a.a.
NCBI ID   WP_039573972.1    Uniprot ID   A0A3Q9Q1T7
Organism   Xanthomonas phaseoli pv. phaseoli strain CFBP412     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3689280..3700536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XppCFBP412P_RS15880 (XppCFBP412P_12845) - 3690547..3690693 (-) 147 WP_080948799.1 serine/threonine protein kinase -
  XppCFBP412P_RS15885 (XppCFBP412P_12850) - 3690755..3690874 (-) 120 WP_039568289.1 hypothetical protein -
  XppCFBP412P_RS15890 (XppCFBP412P_12855) pilB 3691119..3692828 (-) 1710 WP_180959844.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XppCFBP412P_RS15895 (XppCFBP412P_12860) - 3692920..3693375 (-) 456 WP_039568290.1 pilin -
  XppCFBP412P_RS15900 (XppCFBP412P_12865) - 3693485..3693889 (-) 405 WP_247662909.1 pilin -
  XppCFBP412P_RS15905 (XppCFBP412P_12870) pilC 3694280..3695536 (+) 1257 WP_039573972.1 type II secretion system F family protein Machinery gene
  XppCFBP412P_RS15910 (XppCFBP412P_12875) - 3695543..3696406 (+) 864 WP_039573976.1 A24 family peptidase -
  XppCFBP412P_RS15915 (XppCFBP412P_12880) coaE 3696417..3697028 (+) 612 WP_007962470.1 dephospho-CoA kinase -
  XppCFBP412P_RS15920 (XppCFBP412P_23355) - 3697210..3697710 (+) 501 WP_157926372.1 hypothetical protein -
  XppCFBP412P_RS15925 (XppCFBP412P_12885) - 3697701..3698291 (-) 591 Protein_3131 IS256-like element ISXax1 family transposase -
  XppCFBP412P_RS15930 (XppCFBP412P_12890) - 3698364..3699451 (+) 1088 WP_087944778.1 IS3-like element ISXac2 family transposase -
  XppCFBP412P_RS15935 (XppCFBP412P_12895) - 3699494..3700126 (-) 633 Protein_3133 IS256-like element ISXax1 family transposase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45411.79 Da        Isoelectric Point: 10.2788

>NTDB_id=227534 XppCFBP412P_RS15905 WP_039573972.1 3694280..3695536(+) (pilC) [Xanthomonas phaseoli pv. phaseoli strain CFBP412]
MSAVRNAVKTKTAAPAEQMSPFIWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLVVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENLEALKGKIKKALFYPAMVMAVAMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM
LFALIGAAIGSVFAYKRSPAMQHGMDRLVLKAPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VLRMREDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=227534 XppCFBP412P_RS15905 WP_039573972.1 3694280..3695536(+) (pilC) [Xanthomonas phaseoli pv. phaseoli strain CFBP412]
ATGTCAGCAGTACGTAACGCAGTCAAGACGAAGACCGCCGCACCGGCGGAGCAGATGAGCCCGTTTATCTGGGAGGGAAC
AGACAAGCGCGGCGTCAAGATGAAAGGCGAACAAACGGCCCGCAATGCAAATCTGCTGCGTGCCGAGCTGCGACGCCAGG
GCATTACCCCCCTCGTTGTGAAAGTTAAGCCGAAGCCACTATTCGGCGCTGCAGGAAAGAAGGTCTCCGCAAAAGACATT
TCATTTTTCAGCCGACAGATGGCAACCATGATGAAATCGGGCGTGCCGATTGTCGGCGCGCTAGAGATCATTGGTAGCGG
CCAGAAAAATCCGCGCATGCGCACAATGGTTGGCCAGATCAGGACAGATATCGAAGGCGGGGCATCGCTTTACGAAGCCG
TAAGCAAGCACCCGGTGCAATTTGATGAGCTCTATCGGAATTTGGTCAAAGCAGGCGAAGGCGCAGGCGTACTGGAAACT
GTGCTCGACACCGTCGCCACTTACAAAGAGAACCTTGAAGCCCTAAAAGGCAAGATCAAGAAGGCCCTGTTCTACCCTGC
CATGGTAATGGCGGTGGCGATGTTGGTCAGTGCAATCCTGCTTGTTTGGGTGGTCCCCCAATTTGAAGATGTCTTCAAAG
GCTTTGGCGCTGAGCTGCCTGCTTTCACACAGATGATCGTCAACCTGTCTCGCTTTATGGTGTCTTGGTGGTGGCTGATG
CTGTTCGCACTTATTGGCGCTGCAATCGGTTCTGTTTTCGCGTACAAACGTTCACCAGCAATGCAACATGGCATGGACCG
TTTAGTGCTAAAAGCGCCAATCATTGGCCAGATCATGCATAACAGCTCAATTGCAAGATTCGCCCGGACAACGGCGGTTA
CATTCAAGGCCGGCGTACCGCTAGTCGAGGCGCTGGGCATCGTGGCCGGTGCTACAGGCAACTCGGTCTACGAAAAAGCA
GTACTGCGCATGCGCGAAGACGTCTCGGTGGGCTACCCGGTCAACGTAGCGATGAAACAGGTCAACCTGTTTCCGCACAT
GGTGGTGCAGATGACCGCCATCGGCGAAGAAGCGGGCGCGCTGGATGCCATGTTGTTCAAGGTGGCTGAGTATTTCGAGC
AGGAAGTCAACAACGCGGTCGATGCGCTCAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCCTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9Q1T7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.696

97.608

0.514
  pilC Pseudomonas stutzeri DSM 10701

52.593

96.89

0.51
  pilC Acinetobacter baumannii D1279779

51.613

96.411

0.498
  pilC Legionella pneumophila strain ERS1305867

52.525

94.737

0.498
  pilG Neisseria meningitidis 44/76-A

43.21

96.89

0.419
  pilG Neisseria gonorrhoeae MS11

43.069

96.651

0.416
  pilC Vibrio cholerae strain A1552

41.814

94.976

0.397
  pilC Vibrio campbellii strain DS40M4

39.706

97.608

0.388

Multiple sequence alignment