Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   B5D77_RS04220 Genome accession   NZ_CP020664
Coordinates   820208..820573 (+) Length   121 a.a.
NCBI ID   WP_008202346.1    Uniprot ID   -
Organism   Microcystis sp. MC19     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 815208..825573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5D77_RS04200 (B5D77_04155) - 815919..816143 (-) 225 WP_008202331.1 hypothetical protein -
  B5D77_RS04205 (B5D77_04160) hmpF 816408..818048 (-) 1641 WP_106908339.1 pilus motility taxis protein HmpF -
  B5D77_RS26150 - 818972..820011 (+) 1040 Protein_793 RNA-guided endonuclease InsQ/TnpB family protein -
  B5D77_RS04220 (B5D77_04175) pilH 820208..820573 (+) 366 WP_008202346.1 response regulator transcription factor Machinery gene
  B5D77_RS04225 (B5D77_04180) - 820665..821195 (+) 531 WP_008202348.1 chemotaxis protein CheW -
  B5D77_RS04230 (B5D77_04185) pilJ 821289..823952 (+) 2664 WP_106908340.1 methyl-accepting chemotaxis protein Machinery gene
  B5D77_RS04235 (B5D77_04190) - 824026..825237 (+) 1212 WP_008202352.1 glycosyltransferase -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13809.16 Da        Isoelectric Point: 6.3188

>NTDB_id=225337 B5D77_RS04220 WP_008202346.1 820208..820573(+) (pilH) [Microcystis sp. MC19]
MSEILLVEDSQTQRELICGLLRNSGIKVTIATDGVEALEYIQRGNPDLVILDIVMPRMNGYEVCRRLKSDAKTQNIPVVI
CSSKGEVFDRYWGMKIGADAYIVKPFEPIEFIYTIKQLLRR

Nucleotide


Download         Length: 366 bp        

>NTDB_id=225337 B5D77_RS04220 WP_008202346.1 820208..820573(+) (pilH) [Microcystis sp. MC19]
ATGAGCGAAATATTGCTGGTAGAAGACAGCCAAACGCAACGGGAACTGATCTGTGGTCTGCTCCGTAATAGCGGCATTAA
GGTCACGATCGCCACGGATGGGGTAGAAGCCCTCGAATATATCCAGAGAGGCAATCCCGATCTCGTCATTCTCGATATCG
TCATGCCCCGCATGAATGGTTACGAGGTCTGTCGTCGTCTCAAGTCGGATGCAAAAACCCAAAATATCCCGGTGGTCATC
TGTTCCTCAAAAGGGGAAGTCTTTGATCGCTATTGGGGTATGAAAATCGGAGCCGATGCCTACATTGTCAAACCCTTTGA
ACCGATTGAGTTCATTTATACGATTAAACAACTGCTGCGCCGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

70

99.174

0.694
  pilG Acinetobacter baumannii strain A118

40.87

95.041

0.388
  vicR Streptococcus mutans UA159

37.19

100

0.372
  micA Streptococcus pneumoniae Cp1015

36.364

100

0.364
  scnR Streptococcus mutans UA159

36.667

99.174

0.364

Multiple sequence alignment