Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BSR25_RS05875 Genome accession   NZ_CP020604
Coordinates   1177503..1177955 (-) Length   150 a.a.
NCBI ID   WP_010905690.1    Uniprot ID   A0AAC9R1D2
Organism   Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1148345..1185193 1177503..1177955 within 0


Gene organization within MGE regions


Location: 1148345..1185193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR25_RS05695 (BSR25_1128) - 1148345..1149124 (-) 780 WP_086383506.1 peptidoglycan amidohydrolase family protein -
  BSR25_RS05700 (BSR25_1129) - 1149124..1149423 (-) 300 WP_031559226.1 phage holin -
  BSR25_RS05705 (BSR25_1130) - 1149436..1149786 (-) 351 WP_023349296.1 hypothetical protein -
  BSR25_RS05710 (BSR25_1131) - 1149806..1151824 (-) 2019 WP_415880874.1 DUF7013 family protein -
  BSR25_RS05715 (BSR25_1132) - 1151808..1151981 (-) 174 WP_086383510.1 hypothetical protein -
  BSR25_RS05720 (BSR25_1133) - 1151981..1153102 (-) 1122 WP_086383512.1 hypothetical protein -
  BSR25_RS05725 (BSR25_1134) - 1153118..1154905 (-) 1788 WP_086383514.1 phage tail protein -
  BSR25_RS05730 (BSR25_1135) - 1154905..1156440 (-) 1536 WP_086383516.1 distal tail protein Dit -
  BSR25_RS05735 (BSR25_1136) - 1156443..1161365 (-) 4923 WP_086383518.1 phage tail tape measure protein -
  BSR25_RS05740 (BSR25_1137) - 1161590..1162006 (-) 417 WP_021214451.1 phage tail assembly chaperone -
  BSR25_RS05745 (BSR25_1138) - 1162151..1162744 (-) 594 WP_086383520.1 phage tail protein -
  BSR25_RS05750 (BSR25_1139) - 1162775..1163170 (-) 396 WP_010905929.1 DUF806 family protein -
  BSR25_RS05755 (BSR25_1140) - 1163167..1163673 (-) 507 WP_086383523.1 HK97 gp10 family phage protein -
  BSR25_RS05760 (BSR25_1141) - 1163675..1164025 (-) 351 WP_002819792.1 phage head closure protein -
  BSR25_RS05765 (BSR25_1142) - 1164000..1164323 (-) 324 WP_010905932.1 head-tail connector protein -
  BSR25_RS05770 (BSR25_1143) - 1164339..1165565 (-) 1227 WP_086383525.1 phage major capsid protein -
  BSR25_RS05775 (BSR25_1144) - 1165577..1166281 (-) 705 WP_002819795.1 head maturation protease, ClpP-related -
  BSR25_RS05780 (BSR25_1145) - 1166327..1167505 (-) 1179 WP_086383528.1 phage portal protein -
  BSR25_RS05785 (BSR25_1146) - 1167502..1167711 (-) 210 WP_015966929.1 DUF1056 family protein -
  BSR25_RS05790 (BSR25_1147) - 1167680..1169650 (-) 1971 WP_031297103.1 terminase large subunit -
  BSR25_RS05795 (BSR25_1148) - 1169640..1170113 (-) 474 WP_015966926.1 phage terminase small subunit P27 family -
  BSR25_RS05800 (BSR25_1149) - 1170241..1170759 (-) 519 WP_015966979.1 HNH endonuclease -
  BSR25_RS05810 (BSR25_1150) - 1171284..1171706 (-) 423 WP_023349204.1 RinA family protein -
  BSR25_RS05815 - 1172054..1172299 (-) 246 WP_023349207.1 hypothetical protein -
  BSR25_RS05820 (BSR25_1152) - 1172321..1172818 (-) 498 WP_086383531.1 hypothetical protein -
  BSR25_RS05825 (BSR25_1153) - 1172821..1173240 (-) 420 WP_086383533.1 dUTP diphosphatase -
  BSR25_RS05830 (BSR25_1154) - 1173237..1173542 (-) 306 WP_023349170.1 hypothetical protein -
  BSR25_RS05835 (BSR25_1155) - 1173539..1174042 (-) 504 WP_023349171.1 DUF1642 domain-containing protein -
  BSR25_RS05840 (BSR25_1156) - 1174035..1174430 (-) 396 WP_058147723.1 YopX family protein -
  BSR25_RS05850 (BSR25_1158) - 1174939..1175178 (-) 240 WP_058147742.1 DUF1031 family protein -
  BSR25_RS05855 (BSR25_1159) - 1175175..1175480 (-) 306 WP_058147743.1 hypothetical protein -
  BSR25_RS05860 (BSR25_1160) - 1175485..1175874 (-) 390 WP_014570746.1 RusA family crossover junction endodeoxyribonuclease -
  BSR25_RS05865 (BSR25_1161) - 1175871..1176596 (-) 726 WP_015966759.1 hypothetical protein -
  BSR25_RS05870 (BSR25_1162) - 1176596..1177378 (-) 783 WP_015966758.1 phage replisome organizer protein -
  BSR25_RS05875 (BSR25_1163) ssb 1177503..1177955 (-) 453 WP_010905690.1 single-stranded DNA-binding protein Machinery gene
  BSR25_RS05880 (BSR25_1164) - 1177955..1178578 (-) 624 WP_010905689.1 DUF1071 domain-containing protein -
  BSR25_RS05885 (BSR25_1165) - 1178587..1179105 (-) 519 WP_010905688.1 host-nuclease inhibitor Gam family protein -
  BSR25_RS05890 (BSR25_1166) - 1179221..1179436 (-) 216 WP_015966756.1 DUF1408 domain-containing protein -
  BSR25_RS05895 (BSR25_1167) - 1179539..1179817 (+) 279 WP_086383535.1 hypothetical protein -
  BSR25_RS05900 (BSR25_1168) - 1179772..1180005 (-) 234 WP_086383537.1 hypothetical protein -
  BSR25_RS05905 (BSR25_1169) - 1180017..1180253 (-) 237 WP_063280811.1 helix-turn-helix domain-containing protein -
  BSR25_RS05910 (BSR25_1170) - 1180266..1180991 (-) 726 WP_021165562.1 ORF6C domain-containing protein -
  BSR25_RS05915 (BSR25_1171) - 1181005..1181244 (-) 240 WP_023349341.1 helix-turn-helix transcriptional regulator -
  BSR25_RS05920 (BSR25_1172) - 1181342..1181851 (+) 510 WP_011676948.1 hypothetical protein -
  BSR25_RS13130 - 1181837..1182109 (-) 273 WP_198324703.1 hypothetical protein -
  BSR25_RS05930 (BSR25_1173) - 1182176..1182565 (+) 390 WP_063280807.1 hypothetical protein -
  BSR25_RS05935 (BSR25_1175) - 1182727..1182897 (-) 171 WP_198324704.1 putative transcriptional regulator -
  BSR25_RS05940 (BSR25_1176) - 1183159..1184010 (+) 852 WP_086383541.1 helix-turn-helix domain-containing protein -
  BSR25_RS05945 (BSR25_1177) - 1184060..1185193 (+) 1134 WP_063280873.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16643.67 Da        Isoelectric Point: 8.9728

>NTDB_id=224906 BSR25_RS05875 WP_010905690.1 1177503..1177955(-) (ssb) [Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03]
MINNVVLVGRLTRDPELRHTPQNQAVGTFGLAVNRQFKNANGEREADFINCVIWRQQAENLAKFAKKGALIGITGRIQTR
NYENQQGQKVYVTEVVADTFQMLESNKTQGQQTSKPQAQNKKPQAPDPFKAPAADPFAGGTEISDDDLPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=224906 BSR25_RS05875 WP_010905690.1 1177503..1177955(-) (ssb) [Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03]
ATGATTAATAATGTTGTATTAGTAGGTCGCTTAACTCGTGACCCTGAACTTAGACATACACCACAGAACCAAGCAGTAGG
TACATTTGGATTAGCTGTAAATCGCCAGTTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGACAACAAGCCGAAAATTTAGCTAAGTTTGCTAAAAAAGGAGCTTTGATTGGAATAACTGGACGGATTCAAACAAGG
AACTATGAGAACCAACAAGGACAAAAAGTTTATGTTACCGAAGTTGTTGCAGATACTTTCCAAATGCTAGAAAGCAATAA
AACACAAGGTCAGCAAACAAGTAAACCGCAAGCTCAAAATAAAAAGCCACAAGCACCAGACCCTTTTAAAGCTCCTGCTG
CTGATCCATTTGCTGGTGGTACTGAAATTTCAGATGATGACCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.14

100

0.667
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.907

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.654

69.333

0.407
  ssb Neisseria meningitidis MC58

34.302

100

0.393
  ssb Neisseria gonorrhoeae MS11

33.721

100

0.387
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.381

70

0.367
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.429

70

0.36

Multiple sequence alignment