Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OB_RS17710 Genome accession   NC_004193
Coordinates   3613458..3613943 (-) Length   161 a.a.
NCBI ID   WP_011067876.1    Uniprot ID   Q8CX55
Organism   Oceanobacillus iheyensis HTE831     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3608458..3618943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB_RS17690 (OB3474) - 3609777..3611093 (-) 1317 WP_011067872.1 ABC transporter substrate-binding protein -
  OB_RS17695 (OB3475) - 3611218..3611973 (-) 756 WP_011067873.1 SDR family oxidoreductase -
  OB_RS17700 (OB3476) - 3611980..3612963 (-) 984 WP_011067874.1 LacI family DNA-binding transcriptional regulator -
  OB_RS17705 (OB3477) rpsR 3613163..3613393 (-) 231 WP_011067875.1 30S ribosomal protein S18 -
  OB_RS17710 (OB3478) ssbA 3613458..3613943 (-) 486 WP_011067876.1 single-stranded DNA-binding protein Machinery gene
  OB_RS17715 (OB3479) rpsF 3613959..3614246 (-) 288 WP_011067877.1 30S ribosomal protein S6 -
  OB_RS17720 (OB3480) ychF 3614438..3615538 (-) 1101 WP_011067878.1 redox-regulated ATPase YchF -
  OB_RS17725 (OB3481) - 3615756..3615959 (-) 204 WP_011067879.1 DUF951 domain-containing protein -
  OB_RS17730 (OB3482) - 3616004..3616975 (-) 972 WP_011067880.1 mechanosensitive ion channel family protein -
  OB_RS17735 (OB3483) - 3617002..3618030 (-) 1029 WP_011067881.1 membrane protein -
  OB_RS17740 (OB3484) yyaC 3618115..3618738 (+) 624 WP_011067882.1 spore protease YyaC -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 18138.79 Da        Isoelectric Point: 4.5909

>NTDB_id=22352 OB_RS17710 WP_011067876.1 3613458..3613943(-) (ssbA) [Oceanobacillus iheyensis HTE831]
MLNRVVLVGRLTRDPDLRYTPNGVAVANFNIAVNRPFSNQQGNREADFINCVIWRRPAENLANYMKKGSMVGVDGRIQTR
NFEGQDGKTVYVTEVVADSVQFLETKGSQGGQDSSGGYQQNRNQNQYQNQNQYASNQNQDQEDPFKNNGEPIDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=22352 OB_RS17710 WP_011067876.1 3613458..3613943(-) (ssbA) [Oceanobacillus iheyensis HTE831]
ATGTTAAATCGTGTCGTACTGGTAGGCAGGTTAACGAGGGATCCTGATTTACGCTATACACCAAATGGGGTTGCAGTTGC
CAATTTCAACATTGCTGTAAACAGACCTTTCTCGAATCAGCAAGGAAATCGCGAAGCAGACTTTATCAATTGTGTGATTT
GGCGACGTCCAGCTGAAAATCTAGCCAATTATATGAAAAAAGGAAGTATGGTTGGTGTTGACGGCCGAATTCAAACGAGA
AATTTTGAAGGCCAAGATGGAAAAACTGTCTACGTTACTGAAGTAGTAGCAGATAGTGTTCAATTCCTGGAAACAAAGGG
TTCTCAAGGTGGACAGGATTCATCTGGAGGTTACCAGCAAAACAGAAATCAGAACCAATATCAAAATCAAAACCAATATG
CATCTAATCAGAACCAAGATCAAGAGGACCCATTTAAAAATAATGGTGAACCAATTGATATCTCTGATGATGATTTACCG
TTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8CX55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.465

100

0.646
  ssb Latilactobacillus sakei subsp. sakei 23K

58.235

100

0.615
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.522

70.186

0.404
  ssb Neisseria meningitidis MC58

35.465

100

0.379
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.379
  ssb Neisseria gonorrhoeae MS11

35.057

100

0.379

Multiple sequence alignment