Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Regulator
Locus tag   NMB_RS04600 Genome accession   NC_003112
Coordinates   908100..908708 (+) Length   202 a.a.
NCBI ID   WP_061706010.1    Uniprot ID   -
Organism   Neisseria meningitidis MC58     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 903100..913708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB_RS12145 - 903100..903207 (+) 108 Protein_876 IS5/IS1182 family transposase -
  NMB_RS04575 (NMB0882) - 903252..903584 (+) 333 WP_002225363.1 hypothetical protein -
  NMB_RS04580 (NMB0883) - 903916..904425 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NMB_RS04585 (NMB0884) - 904942..905529 (-) 588 WP_002220670.1 superoxide dismutase -
  NMB_RS04590 (NMB0885) dnaB 905693..907099 (+) 1407 WP_002225362.1 replicative DNA helicase -
  NMB_RS04595 (NMB0886) pilH 907408..908076 (+) 669 WP_002230433.1 GspH/FimT family pseudopilin Machinery gene
  NMB_RS04600 (NMB0887) pilV 908100..908708 (+) 609 WP_061706010.1 type IV pilus modification protein PilV Regulator
  NMB_RS04605 (NMB0888) pilJ 908705..909646 (+) 942 WP_002244084.1 PilW family protein Machinery gene
  NMB_RS04610 (NMB0889) pilK 909625..910218 (+) 594 WP_002244085.1 pilus assembly PilX family protein Machinery gene
  NMB_RS04615 (NMB0890) pilX 910223..910696 (+) 474 WP_002225356.1 PilX family type IV pilin Machinery gene
  NMB_RS04620 (NMB0892) - 912465..912833 (-) 369 Protein_886 AzlC family ABC transporter permease -
  NMB_RS04625 (NMB0893) dut 913033..913485 (+) 453 WP_002225353.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21876.75 Da        Isoelectric Point: 4.8040

>NTDB_id=22352 NMB_RS04600 WP_061706010.1 908100..908708(+) (pilV) [Neisseria meningitidis MC58]
MKNNDCFRLKDSQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMGNHTLSAVDGDFAIDAMKTKGQLAEAQLKRFSYELKNALPDAAAIHYAVCKDSSGNAPTLSGNAFSSNCDNKANG
DTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=22352 NMB_RS04600 WP_061706010.1 908100..908708(+) (pilV) [Neisseria meningitidis MC58]
ATGAAGAATAATGATTGCTTCCGCCTGAAAGATTCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTTGCTATGCTCGT
TCTGACCATCGGTATTTTGGCACTATTGTCTGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAGGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGGGAAACCATACACTATCAGCTGTGGATGGCGATTTTGCGATTGATGCCATGAAAACTAAGGGGCA
ATTGGCAGAGGCACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGCAGCCATCCATTACGCCG
TCTGCAAGGATTCGTCGGGTAACGCGCCGACATTGTCCGGCAATGCTTTTTCTTCAAATTGCGACAATAAGGCAAACGGG
GATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGTGAGCGG
CGACAATATCGTATATACTTATCAGGCAAGGGTCGGAGGTCGGGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

96.602

100

0.985
  pilV/pilI Neisseria gonorrhoeae MS11

84.158

100

0.842

Multiple sequence alignment