Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   A6J82_RS09865 Genome accession   NZ_CP020449
Coordinates   1932114..1932302 (-) Length   62 a.a.
NCBI ID   WP_000027835.1    Uniprot ID   A0AAV3JNT7
Organism   Streptococcus agalactiae strain FDAARGOS_254     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1925760..1933369 1932114..1932302 within 0


Gene organization within MGE regions


Location: 1925760..1933369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J82_RS09845 (A6J82_09840) - 1925760..1926893 (-) 1134 WP_000564843.1 ISAs1-like element IS1548 family transposase -
  A6J82_RS09850 (A6J82_09845) - 1927063..1928268 (-) 1206 WP_000078930.1 FtsW/RodA/SpoVE family cell cycle protein -
  A6J82_RS09855 (A6J82_09850) - 1928589..1930001 (+) 1413 WP_017771557.1 IS1182 family transposase -
  A6J82_RS09860 (A6J82_09855) ltrA 1930051..1931328 (-) 1278 WP_001292556.1 group II intron reverse transcriptase/maturase -
  A6J82_RS09865 (A6J82_09860) prx 1932114..1932302 (-) 189 WP_000027835.1 hypothetical protein Regulator
  A6J82_RS09870 (A6J82_09865) - 1932344..1932544 (-) 201 WP_000076708.1 CsbD family protein -
  A6J82_RS09875 (A6J82_09870) - 1932722..1933369 (+) 648 Protein_1827 IS3 family transposase -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7180.25 Da        Isoelectric Point: 4.7815

>NTDB_id=223134 A6J82_RS09865 WP_000027835.1 1932114..1932302(-) (prx) [Streptococcus agalactiae strain FDAARGOS_254]
MSIRTDIDEFKEAIDKGYISGNTVAIVRKNGKIFDYVLLHEEVREEEVVTVERVLDVLRKLS

Nucleotide


Download         Length: 189 bp        

>NTDB_id=223134 A6J82_RS09865 WP_000027835.1 1932114..1932302(-) (prx) [Streptococcus agalactiae strain FDAARGOS_254]
TTGTCTATCAGAACAGATATAGATGAGTTTAAAGAAGCGATTGATAAAGGCTATATTTCAGGGAACACAGTAGCGATAGT
GCGTAAAAACGGAAAGATATTTGATTATGTGTTACTACACGAAGAAGTGAGAGAAGAAGAGGTTGTTACAGTTGAGAGAG
TGCTTGATGTACTGAGGAAGTTATCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

72.222

87.097

0.629
  prx Streptococcus pyogenes MGAS8232

69.091

88.71

0.613
  prx Streptococcus pyogenes MGAS315

66.667

87.097

0.581
  prx Streptococcus pyogenes MGAS315

85

64.516

0.548
  prx Streptococcus pyogenes MGAS315

61.818

88.71

0.548
  prx Streptococcus pyogenes MGAS315

74.359

62.903

0.468
  prx Streptococcus pyogenes MGAS315

78.378

59.677

0.468

Multiple sequence alignment