Detailed information
Bioinformatically predicted
Overview
| Name | rapF | Type | Regulator |
| Locus tag | C2I05_RS13830 | Genome accession | NZ_CP026039 |
| Coordinates | 2600348..2601523 (+) | Length | 391 a.a. |
| NCBI ID | WP_080624175.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain PK1_2 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2595348..2606523
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2I05_RS13810 (C2I05_13775) | cwlT | 2596314..2597303 (+) | 990 | WP_120027809.1 | bifunctional lytic transglycosylase/C40 family peptidase | - |
| C2I05_RS13815 (C2I05_13780) | - | 2597318..2597824 (+) | 507 | WP_120027810.1 | hypothetical protein | - |
| C2I05_RS13820 (C2I05_13785) | - | 2597878..2598264 (+) | 387 | WP_060563130.1 | cystatin-like fold lipoprotein | - |
| C2I05_RS13825 (C2I05_13790) | - | 2598330..2600078 (-) | 1749 | WP_120027811.1 | DUF4209 domain-containing protein | - |
| C2I05_RS13830 (C2I05_13795) | rapF | 2600348..2601523 (+) | 1176 | WP_080624175.1 | Rap family tetratricopeptide repeat protein | Regulator |
| C2I05_RS13835 (C2I05_13800) | - | 2601480..2601599 (+) | 120 | WP_080624176.1 | phosphatase | - |
| C2I05_RS13840 (C2I05_13805) | - | 2601682..2602389 (+) | 708 | WP_080624177.1 | hypothetical protein | - |
| C2I05_RS13845 (C2I05_13810) | yddN | 2602876..2603895 (-) | 1020 | WP_120027812.1 | LLM class flavin-dependent oxidoreductase | - |
| C2I05_RS13850 (C2I05_13815) | lrpA | 2604156..2604566 (+) | 411 | WP_003246601.1 | transcriptional regulator LrpA | - |
| C2I05_RS13855 (C2I05_13820) | lrpB | 2604689..2605138 (-) | 450 | WP_120027814.1 | transcriptional regulator LrpB | - |
| C2I05_RS13860 (C2I05_13825) | yddQ | 2605253..2605795 (+) | 543 | WP_003234256.1 | cysteine hydrolase family protein | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 46471.11 Da Isoelectric Point: 5.2971
>NTDB_id=222985 C2I05_RS13830 WP_080624175.1 2600348..2601523(+) (rapF) [Bacillus subtilis strain PK1_2]
MRGVFLDKDKIPYDLVTKKLNEWYTSIKNDQVEKAEIIKTEVEKELLNMEENQDALLYYQLLEFRHEIMLSYMKSKEIEK
LHNAYETIKEIEEQGQLTGMLEYYYYFFKGMYEFRRKELTTAISAYRIAESKLSEVEDEIEKAEFFFKVSYVYYYMKQTY
FSMNYANRALKIFREYEEYAVQTLRCQFIVAGNLIDSLEYECALQQFLNSLELAKKNNIEHLIAMSHMNIGICYDELKEY
KKASQHLVLALEIFEKSKHSFLTKTLFTLTYVEAKQQNYDVALSYFRKGRFIADKSNDKEYSAKFKILEGLFFSDGDIQL
IKNAFSYLASRKMFADVENFSIEVADYFHEQGNLMLSNEYYRMSIEARRKIKKGEIIDENQPDSIGSSGIR
MRGVFLDKDKIPYDLVTKKLNEWYTSIKNDQVEKAEIIKTEVEKELLNMEENQDALLYYQLLEFRHEIMLSYMKSKEIEK
LHNAYETIKEIEEQGQLTGMLEYYYYFFKGMYEFRRKELTTAISAYRIAESKLSEVEDEIEKAEFFFKVSYVYYYMKQTY
FSMNYANRALKIFREYEEYAVQTLRCQFIVAGNLIDSLEYECALQQFLNSLELAKKNNIEHLIAMSHMNIGICYDELKEY
KKASQHLVLALEIFEKSKHSFLTKTLFTLTYVEAKQQNYDVALSYFRKGRFIADKSNDKEYSAKFKILEGLFFSDGDIQL
IKNAFSYLASRKMFADVENFSIEVADYFHEQGNLMLSNEYYRMSIEARRKIKKGEIIDENQPDSIGSSGIR
Nucleotide
Download Length: 1176 bp
>NTDB_id=222985 C2I05_RS13830 WP_080624175.1 2600348..2601523(+) (rapF) [Bacillus subtilis strain PK1_2]
TTGCGGGGTGTTTTCTTAGATAAAGATAAAATTCCGTACGACTTAGTCACGAAAAAATTAAATGAATGGTATACATCAAT
AAAAAATGATCAAGTTGAAAAAGCAGAGATTATAAAAACAGAAGTAGAGAAAGAATTGCTAAACATGGAAGAAAACCAAG
ATGCCCTTTTATATTATCAGCTATTAGAATTTAGACATGAGATAATGCTGAGTTATATGAAATCTAAGGAAATAGAAAAA
CTCCATAATGCTTATGAGACCATAAAAGAAATTGAAGAACAAGGGCAATTAACTGGCATGTTGGAATACTATTATTACTT
CTTTAAGGGAATGTACGAGTTTAGACGTAAAGAATTAACTACGGCAATAAGTGCCTATCGAATAGCTGAATCAAAGTTGT
CGGAAGTTGAGGATGAAATAGAAAAAGCAGAGTTTTTTTTCAAAGTGTCCTATGTATATTATTATATGAAACAAACGTAT
TTTTCCATGAATTATGCCAATCGGGCGTTAAAAATATTTAGAGAGTATGAAGAATATGCTGTCCAGACTCTGCGTTGTCA
ATTTATTGTAGCGGGAAACTTAATTGACTCATTAGAGTATGAATGCGCTTTGCAACAATTTTTAAATTCCTTGGAACTTG
CCAAGAAAAATAACATAGAGCATTTAATTGCAATGTCACACATGAATATTGGGATTTGTTATGATGAATTGAAGGAATAT
AAAAAGGCTTCACAACATTTAGTCTTAGCGTTAGAAATTTTCGAAAAATCAAAACATAGTTTCCTAACAAAGACTTTATT
CACTTTAACGTATGTTGAAGCAAAACAACAAAATTATGATGTTGCTTTGTCATACTTTAGGAAAGGGCGATTTATTGCCG
ATAAAAGTAATGATAAGGAATACTCAGCGAAATTCAAAATATTAGAGGGATTATTTTTTTCTGATGGTGATATTCAATTA
ATAAAGAATGCATTTTCATATCTGGCTTCGAGAAAAATGTTTGCTGATGTTGAAAATTTTTCAATTGAAGTCGCTGATTA
TTTTCATGAACAAGGAAATTTAATGCTCTCTAATGAATATTATCGTATGAGTATTGAAGCAAGACGAAAAATTAAAAAAG
GAGAGATTATTGATGAAAATCAGCCGGATTCTATTGGCAGCAGTGGTATTAGGTAG
TTGCGGGGTGTTTTCTTAGATAAAGATAAAATTCCGTACGACTTAGTCACGAAAAAATTAAATGAATGGTATACATCAAT
AAAAAATGATCAAGTTGAAAAAGCAGAGATTATAAAAACAGAAGTAGAGAAAGAATTGCTAAACATGGAAGAAAACCAAG
ATGCCCTTTTATATTATCAGCTATTAGAATTTAGACATGAGATAATGCTGAGTTATATGAAATCTAAGGAAATAGAAAAA
CTCCATAATGCTTATGAGACCATAAAAGAAATTGAAGAACAAGGGCAATTAACTGGCATGTTGGAATACTATTATTACTT
CTTTAAGGGAATGTACGAGTTTAGACGTAAAGAATTAACTACGGCAATAAGTGCCTATCGAATAGCTGAATCAAAGTTGT
CGGAAGTTGAGGATGAAATAGAAAAAGCAGAGTTTTTTTTCAAAGTGTCCTATGTATATTATTATATGAAACAAACGTAT
TTTTCCATGAATTATGCCAATCGGGCGTTAAAAATATTTAGAGAGTATGAAGAATATGCTGTCCAGACTCTGCGTTGTCA
ATTTATTGTAGCGGGAAACTTAATTGACTCATTAGAGTATGAATGCGCTTTGCAACAATTTTTAAATTCCTTGGAACTTG
CCAAGAAAAATAACATAGAGCATTTAATTGCAATGTCACACATGAATATTGGGATTTGTTATGATGAATTGAAGGAATAT
AAAAAGGCTTCACAACATTTAGTCTTAGCGTTAGAAATTTTCGAAAAATCAAAACATAGTTTCCTAACAAAGACTTTATT
CACTTTAACGTATGTTGAAGCAAAACAACAAAATTATGATGTTGCTTTGTCATACTTTAGGAAAGGGCGATTTATTGCCG
ATAAAAGTAATGATAAGGAATACTCAGCGAAATTCAAAATATTAGAGGGATTATTTTTTTCTGATGGTGATATTCAATTA
ATAAAGAATGCATTTTCATATCTGGCTTCGAGAAAAATGTTTGCTGATGTTGAAAATTTTTCAATTGAAGTCGCTGATTA
TTTTCATGAACAAGGAAATTTAATGCTCTCTAATGAATATTATCGTATGAGTATTGAAGCAAGACGAAAAATTAAAAAAG
GAGAGATTATTGATGAAAATCAGCCGGATTCTATTGGCAGCAGTGGTATTAGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
38.525 |
93.606 |
0.361 |