Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   A6J72_RS02830 Genome accession   NZ_CP020433
Coordinates   565589..566179 (-) Length   196 a.a.
NCBI ID   WP_003073523.1    Uniprot ID   A0A428EQY4
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 560589..571179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS02805 (A6J72_02800) - 561013..561777 (-) 765 WP_082311726.1 ABC transporter ATP-binding protein -
  A6J72_RS02810 (A6J72_02805) - 561777..562727 (-) 951 WP_082311727.1 branched-chain amino acid ABC transporter permease -
  A6J72_RS02815 (A6J72_02810) - 562731..563600 (-) 870 WP_037584539.1 branched-chain amino acid ABC transporter permease -
  A6J72_RS02820 (A6J72_02815) - 563983..565146 (-) 1164 WP_082311728.1 ABC transporter substrate-binding protein -
  A6J72_RS02825 (A6J72_02820) - 565229..565498 (-) 270 WP_003073520.1 DUF2129 domain-containing protein -
  A6J72_RS02830 (A6J72_02825) clpP 565589..566179 (-) 591 WP_003073523.1 ATP-dependent Clp protease proteolytic subunit Regulator
  A6J72_RS02835 (A6J72_02830) upp 566292..566921 (-) 630 WP_003025639.1 uracil phosphoribosyltransferase -
  A6J72_RS02840 (A6J72_02835) mgtA 567019..569673 (-) 2655 WP_082311729.1 magnesium-translocating P-type ATPase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21489.56 Da        Isoelectric Point: 4.8097

>NTDB_id=222985 A6J72_RS02830 WP_003073523.1 565589..566179(-) (clpP) [Streptococcus intermedius strain FDAARGOS_233]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGAVEDNMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEKILADNSGK
TVKQVHKDAERDYWMSAQETLDYGFIDEIMANNNLN

Nucleotide


Download         Length: 591 bp        

>NTDB_id=222985 A6J72_RS02830 WP_003073523.1 565589..566179(-) (clpP) [Streptococcus intermedius strain FDAARGOS_233]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGGGAACGCTCGTACGATATTTACTCACGTCTTTTAAAAGATCGCAT
TATTATGCTAACTGGAGCAGTTGAAGACAACATGGCCAATTCTATTATTGCCCAACTGCTTTTCCTAGATGCTCAAGATA
GTACAAAGGATATTTATCTTTATATCAATACACCAGGAGGTTCTGTATCGGCGGGTCTAGCGATTGTCGATACAATGAAC
TTCATCAAATCAGATGTTCAAACAATTGTCATGGGAATGGCTGCATCCATGGGAACAATCATCGCTTCAAGTGGTGCTAA
AGGCAAACGCTTTATGTTGCCAAATGCAGAGTACATGATTCACCAACCAATGGGTGGAACTGGTGGCGGTACGCAACAAA
CCGATATGGCGATTGCTGCTGAACATTTGCTGAAAACTCGAAACAATTTGGAAAAAATTCTTGCAGATAACTCTGGTAAG
ACCGTTAAGCAAGTTCATAAAGATGCTGAACGTGACTACTGGATGAGTGCTCAAGAAACACTAGATTATGGTTTCATTGA
TGAAATCATGGCAAATAATAATTTGAACTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A428EQY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

91.837

100

0.918
  clpP Streptococcus pneumoniae R6

91.837

100

0.918
  clpP Streptococcus pneumoniae TIGR4

91.837

100

0.918
  clpP Streptococcus pneumoniae D39

91.837

100

0.918
  clpP Streptococcus thermophilus LMG 18311

91.795

99.49

0.913
  clpP Streptococcus thermophilus LMD-9

91.795

99.49

0.913
  clpP Streptococcus pyogenes MGAS315

91.282

99.49

0.908
  clpP Streptococcus pyogenes JRS4

91.282

99.49

0.908
  clpP Streptococcus mutans UA159

91.282

99.49

0.908
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

85.128

99.49

0.847
  clpP Lactococcus lactis subsp. cremoris KW2

84.615

99.49

0.842
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.549

98.469

0.577
  clpP Bacillus subtilis subsp. subtilis str. 168

57.812

97.959

0.566

Multiple sequence alignment