Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   A6J31_RS06405 Genome accession   NZ_CP020431
Coordinates   1240346..1241839 (-) Length   497 a.a.
NCBI ID   WP_080610741.1    Uniprot ID   -
Organism   Streptococcus sp. FDAARGOS_192     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1235346..1246839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J31_RS06375 (A6J31_06310) - 1235474..1235851 (+) 378 WP_060971837.1 GntR family transcriptional regulator -
  A6J31_RS06380 (A6J31_06315) - 1235856..1236554 (+) 699 WP_080610738.1 ABC transporter ATP-binding protein -
  A6J31_RS06385 (A6J31_06320) - 1236566..1237351 (+) 786 WP_021143813.1 hypothetical protein -
  A6J31_RS06390 (A6J31_06325) amiF 1237403..1238332 (-) 930 WP_080610739.1 ATP-binding cassette domain-containing protein Regulator
  A6J31_RS06395 (A6J31_06330) amiE 1238325..1239410 (-) 1086 WP_080610740.1 ABC transporter ATP-binding protein Regulator
  A6J31_RS06400 (A6J31_06335) amiD 1239420..1240346 (-) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  A6J31_RS06405 (A6J31_06340) amiC 1240346..1241839 (-) 1494 WP_080610741.1 ABC transporter permease Regulator
  A6J31_RS06410 (A6J31_06345) amiA 1241900..1243870 (-) 1971 WP_080610742.1 peptide ABC transporter substrate-binding protein Regulator
  A6J31_RS06415 (A6J31_06350) amiA 1244051..1246021 (-) 1971 WP_080610743.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55874.66 Da        Isoelectric Point: 10.0480

>NTDB_id=222879 A6J31_RS06405 WP_080610741.1 1240346..1241839(-) (amiC) [Streptococcus sp. FDAARGOS_192]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERMGYIEYYDTKELQEKAS
SVDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTQSSEVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVSVITGATLTETIFAFPGMGKMLIDSVRASNNAMVVGLVFIFTALTIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=222879 A6J31_RS06405 WP_080610741.1 1240346..1241839(-) (amiC) [Streptococcus sp. FDAARGOS_192]
ATGAAAAAATACATTTTATTGAGAACCCTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAACAAGATTGCAAAGACAGCCGATTCTAAGG
CTAACTATGAAAATACAATCTATGAGCGTATGGGTTATATCGAGTACTACGACACCAAAGAGTTGCAGGAGAAAGCTAGC
TCAGTTGACAAGTCGGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGCTGGCGTTTGCATCAATTCAAGCAAAGTAAACAATTCTATGCAACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATCGGTTGGTCAGTTGTCGGTTCAGGAACTAAGCATAAATATTTGCTTTACTTTAACGG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACCTCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACGCAAGGCCAAGGGCAAACACAAAGCTCTGAGGTCAACTTCCCTACTGGTAAGAAGATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGATGCGAGAGATCGTTCTTACTATGGAAATGACCCATACAC
AGCAACCAAGAGTCGCTACCAATACCCATCAATGGTGACAAGCTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCCTTGGCAATTCCATTGGGATCATACATGGCACGCTTTAAAAACACACTCTTTGATAGTGTATCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCTATTTGGATTCGTCGTTACATGATCGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCGAATAAACACATTTTCAAAAATGCTATGGTTTCCTTGGTTTCAGGAATCCCAGCATCTATCGTTAG
TGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATTGACTCTGTCCGTG
CTTCAAATAACGCTATGGTTGTGGGTCTTGTATTTATTTTCACAGCCCTCACCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATAATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

98.189

100

0.982
  amiC Streptococcus thermophilus LMG 18311

97.586

100

0.976
  amiC Streptococcus thermophilus LMD-9

97.586

100

0.976

Multiple sequence alignment