Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   A6J31_RS06390 Genome accession   NZ_CP020431
Coordinates   1237403..1238332 (-) Length   309 a.a.
NCBI ID   WP_080610739.1    Uniprot ID   A0A1V0GDW6
Organism   Streptococcus sp. FDAARGOS_192     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1232403..1243332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J31_RS06365 (A6J31_06300) - 1233687..1234505 (-) 819 WP_037603016.1 Cof-type HAD-IIB family hydrolase -
  A6J31_RS06370 (A6J31_06305) - 1234498..1235292 (-) 795 WP_080610737.1 HAD-IIB family hydrolase -
  A6J31_RS06375 (A6J31_06310) - 1235474..1235851 (+) 378 WP_060971837.1 GntR family transcriptional regulator -
  A6J31_RS06380 (A6J31_06315) - 1235856..1236554 (+) 699 WP_080610738.1 ABC transporter ATP-binding protein -
  A6J31_RS06385 (A6J31_06320) - 1236566..1237351 (+) 786 WP_021143813.1 hypothetical protein -
  A6J31_RS06390 (A6J31_06325) amiF 1237403..1238332 (-) 930 WP_080610739.1 ATP-binding cassette domain-containing protein Regulator
  A6J31_RS06395 (A6J31_06330) amiE 1238325..1239410 (-) 1086 WP_080610740.1 ABC transporter ATP-binding protein Regulator
  A6J31_RS06400 (A6J31_06335) amiD 1239420..1240346 (-) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  A6J31_RS06405 (A6J31_06340) amiC 1240346..1241839 (-) 1494 WP_080610741.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35019.09 Da        Isoelectric Point: 6.7325

>NTDB_id=222876 A6J31_RS06390 WP_080610739.1 1237403..1238332(-) (amiF) [Streptococcus sp. FDAARGOS_192]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKQIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVELRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=222876 A6J31_RS06390 WP_080610739.1 1237403..1238332(-) (amiF) [Streptococcus sp. FDAARGOS_192]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACTACTATCGGTCGTG
CCATTATTGGTCTGAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGGCACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTTGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAAGATGAGGAAGATCGTAAAGCTAAAATCAAGCAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATTGGG
ATTGCGCGTTCCTTGGTTATGCAACCTGACTTGGTCATCGCCGACGAACCAATCTCAGCCCTTGACGTGTCAGTCCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTATCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCTGTTGATAAACCAGAGATGGTTGAACTACGTCCAGGACACTTCGTTT
GGGGTAACAAGGCCGAGATTGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0GDW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.353

100

0.994
  amiF Streptococcus thermophilus LMG 18311

97.735

100

0.977
  amiF Streptococcus thermophilus LMD-9

97.411

100

0.974

Multiple sequence alignment