Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   A6J31_RS06395 Genome accession   NZ_CP020431
Coordinates   1238325..1239410 (-) Length   361 a.a.
NCBI ID   WP_080610740.1    Uniprot ID   A0A1V0GDY0
Organism   Streptococcus sp. FDAARGOS_192     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1233325..1244410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J31_RS06365 (A6J31_06300) - 1233687..1234505 (-) 819 WP_037603016.1 Cof-type HAD-IIB family hydrolase -
  A6J31_RS06370 (A6J31_06305) - 1234498..1235292 (-) 795 WP_080610737.1 HAD-IIB family hydrolase -
  A6J31_RS06375 (A6J31_06310) - 1235474..1235851 (+) 378 WP_060971837.1 GntR family transcriptional regulator -
  A6J31_RS06380 (A6J31_06315) - 1235856..1236554 (+) 699 WP_080610738.1 ABC transporter ATP-binding protein -
  A6J31_RS06385 (A6J31_06320) - 1236566..1237351 (+) 786 WP_021143813.1 hypothetical protein -
  A6J31_RS06390 (A6J31_06325) amiF 1237403..1238332 (-) 930 WP_080610739.1 ATP-binding cassette domain-containing protein Regulator
  A6J31_RS06395 (A6J31_06330) amiE 1238325..1239410 (-) 1086 WP_080610740.1 ABC transporter ATP-binding protein Regulator
  A6J31_RS06400 (A6J31_06335) amiD 1239420..1240346 (-) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  A6J31_RS06405 (A6J31_06340) amiC 1240346..1241839 (-) 1494 WP_080610741.1 ABC transporter permease Regulator
  A6J31_RS06410 (A6J31_06345) amiA 1241900..1243870 (-) 1971 WP_080610742.1 peptide ABC transporter substrate-binding protein Regulator

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 39886.56 Da        Isoelectric Point: 4.6482

>NTDB_id=222877 A6J31_RS06395 WP_080610740.1 1238325..1239410(-) (amiE) [Streptococcus sp. FDAARGOS_192]
MTENKNVILSARDIVVEFDVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGQDL
TKLKSHQDWAPIRGAKIATIFQDPMTSLDPIKTIGSQIVEVIVKHQGKSAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACHPDVLICDEPTTALDVTIQAQIIDLLKSLKDEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDKGELFSIPGTPPSLYTPVVGDAFALRSDYAMQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVEKPAVIQNLHEKIRANMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=222877 A6J31_RS06395 WP_080610740.1 1238325..1239410(-) (amiE) [Streptococcus sp. FDAARGOS_192]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGACGTTCGTGACCGTGTTTTGACAGC
TATTCGAGGAGTTTCCCTTGATTTGGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGTAAATCAGTTT
TGACTAAGACTTTCACAGGGATGCTTGAAGAAAATGGTCGTGTCGCTAGTGGTTCGATTGATTATCGCGGTCAAGATTTG
ACTAAGCTTAAGAGTCACCAAGATTGGGCACCTATTCGTGGGGCTAAGATTGCGACTATCTTCCAAGATCCTATGACCAG
TCTTGACCCAATTAAGACTATCGGTAGCCAAATTGTTGAAGTCATTGTCAAACACCAAGGAAAATCAGCCAAAGAAGCTA
AAAAAATGGCCATTGATTACATGGACAAGGTTGGTATTCCTGATGCTGAAAAACGTTTCAATGAGTATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTTATTGCCATTGCTTTGGCTTGTCATCCAGATGTCCTTATCTGTGACGAACCAAC
AACTGCCCTTGATGTGACCATTCAAGCTCAAATCATCGACCTCTTGAAATCACTCAAAGATGAGTACGGTTTCTCAGTGA
TTTTCATTACCCATGACCTTGGTGTGGTAGCAAGTATCGCTGATAAGGTTGCTGTTATGTATGCTGGTGAAATCATTGAA
TACGCAACTGTTGAGGAAATTTTCTATGAGCCATGTCATCCATACACGTGGAGCTTGCTTTCAAGCTTGCCACAGTTGGC
CGATGATAAGGGTGAGCTTTTCTCAATTCCAGGGACACCACCATCACTTTATACACCAGTTGTTGGGGATGCCTTTGCCT
TGCGTTCAGACTATGCTATGCAGATTGACTTCGAGGAAAAAGCACCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCACCAAAAGTTGAAAAACCTGCGGTTATCCAAAATCTACATGAAAAAATCCGTGCTAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1V0GDY0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

99.169

100

0.992

  amiE Streptococcus thermophilus LMG 18311

96.399

100

0.964

  amiE Streptococcus thermophilus LMD-9

96.399

100

0.964

  oppD Streptococcus mutans UA159

54.441

96.676

0.526


Multiple sequence alignment