Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   A6J31_RS06415 Genome accession   NZ_CP020431
Coordinates   1244051..1246021 (-) Length   656 a.a.
NCBI ID   WP_080610743.1    Uniprot ID   A0A1V0GDY3
Organism   Streptococcus sp. FDAARGOS_192     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1239051..1251021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J31_RS06400 (A6J31_06335) amiD 1239420..1240346 (-) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  A6J31_RS06405 (A6J31_06340) amiC 1240346..1241839 (-) 1494 WP_080610741.1 ABC transporter permease Regulator
  A6J31_RS06410 (A6J31_06345) amiA 1241900..1243870 (-) 1971 WP_080610742.1 peptide ABC transporter substrate-binding protein Regulator
  A6J31_RS06415 (A6J31_06350) amiA 1244051..1246021 (-) 1971 WP_080610743.1 peptide ABC transporter substrate-binding protein Regulator
  A6J31_RS06420 (A6J31_06355) pta 1246258..1247241 (-) 984 WP_021143808.1 phosphate acetyltransferase -
  A6J31_RS06425 (A6J31_06360) - 1247256..1248152 (-) 897 WP_080610744.1 RluA family pseudouridine synthase -
  A6J31_RS06430 (A6J31_06365) - 1248149..1248985 (-) 837 WP_002884507.1 NAD kinase -
  A6J31_RS06435 (A6J31_06370) - 1248957..1249631 (-) 675 WP_014634828.1 GTP pyrophosphokinase family protein -
  A6J31_RS06440 (A6J31_06375) - 1249727..1250302 (+) 576 WP_002886838.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71922.85 Da        Isoelectric Point: 4.9751

>NTDB_id=222881 A6J31_RS06415 WP_080610743.1 1244051..1246021(-) (amiA) [Streptococcus sp. FDAARGOS_192]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYGYIYNSDPETLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGVKWYTSDGEEYADVTAKDFVTGLKHAADSKAGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDHTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQEAQERSFSDGALSIARVFPMSSNYASVEKKYKDNIYYTAPGASTAAIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQVNGKDGAALALRNLFVPSDFVSAGDKTFGDLVTEKMSTYGDEWSGVNF
ADGQDGLYNAEKAKTEFAKAKESLQGEGVQFPIHLDLPVDQSSKLNVAQAQSLKQTIEKSLGSENVVIDINQLSSDDMQN
ATLNAANAAAEDWDISNGVVWGPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=222881 A6J31_RS06415 WP_080610743.1 1244051..1246021(-) (amiA) [Streptococcus sp. FDAARGOS_192]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTGGCACTCCTCAGTGTAGGTGCCTTAGCGGCTTGTTCATCTAAGTC
AAGCACTAGTGGAACGACTTATGGTTATATTTATAACTCAGATCCTGAAACATTGGACTATATCACGTCAAATACTGGAC
CTACTAAGACTGCTGTAACTAATGGTGTAGATGGTCTTATGGAAGCTGATAAATATGGGAACCTTGTTCCTTCTGTAGCT
GAAGATTGGTCAGTTTCTCAAGATGGTCTTACCTATACCTATAAAATCCGTAAGGGTGTTAAATGGTACACTTCAGATGG
TGAAGAGTATGCTGATGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCTGATTCCAAAGCTGGAGCCCTCT
ATTTGGTACAAGATTCTATTGCAGGCTTGTCTGACTACCTCTCTGGTGCCAATAAAGATTTCTCAAATGTAGGTGTCAAA
GCAATCGACGATCACACATTGCAATATACCCTTAAAAAACCAGAACCATACTGGAACTCTAAGACAACCTATGGTTTGCT
CTTCCCAGTTAATGAAGACTTTCTCAAGAACAAAGGAAAAGATTTTGGTAAGTCAACAGACCCAACATCTATCCTCTATA
ATGGTCCTTTCCTTCTTAAATCTTTGACAGCTAAATCATCTATCGAGTTGACTAAGAATGAGAATTATTGGGATAAGAAG
AACGTGCATTTCGACGCTATCAAATTGTCATATTATGATGGTTCTGACCAGGAAGCTCAAGAGCGTAGCTTCTCAGATGG
TGCTCTCAGCATTGCACGTGTATTCCCTATGAGCTCTAACTATGCGTCAGTAGAAAAGAAATATAAAGATAATATTTATT
ACACAGCACCAGGTGCGTCTACAGCAGCTATTGGTGTGAATATTGATCGTCAAAGCTATAAATTCTCAGCGAAGAAGACA
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTCCGTCAATCAATCAACTTCGCTATTGATCGTAC
AGCTTATCAATCTCAAGTTAATGGTAAAGATGGGGCAGCTCTTGCTCTACGTAACCTCTTTGTTCCTTCTGATTTTGTCA
GTGCAGGGGATAAGACCTTTGGTGACCTTGTGACAGAGAAAATGAGCACTTACGGTGATGAATGGTCTGGTGTCAATTTT
GCAGATGGTCAAGACGGTCTCTACAATGCGGAAAAAGCTAAGACTGAGTTTGCCAAAGCCAAAGAATCTCTTCAAGGTGA
AGGTGTTCAATTCCCAATTCACTTAGACCTTCCAGTTGATCAAAGTTCTAAACTTAATGTTGCTCAAGCTCAATCATTGA
AACAAACCATTGAAAAATCATTGGGTAGTGAAAATGTAGTTATCGATATCAACCAGTTGTCATCTGATGACATGCAAAAT
GCAACCCTTAATGCGGCTAATGCGGCAGCAGAAGACTGGGATATTTCAAACGGTGTTGTTTGGGGTCCAGACTATCAAGA
TCCATCAACTTACCTTGATATCTTTAAGACAACTTCAAGTGAAAATACCAAGACTTTCATGGGTTATGATGATCCAAACA
ATGCGGCCGCAGCCCAAGTAGGTCTTAAAGATTATGACGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACCTCAAC
GCTCGTTACGACCGATATGCCCAAGCTCAAGCATGGTTGGAAGATAGCTCGCTTGTCATTCCATTGACTGTTGGTAACGG
TGCAGCACCAGTTATCTCACGCTTGACACCATTTACGGGTGCTAGCATGCAAGTGGGTGATAAGAACTCATCAGACTACT
TCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0GDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

96.037

100

0.96
  amiA3 Streptococcus thermophilus LMG 18311

90.411

100

0.905
  amiA3 Streptococcus thermophilus LMD-9

90.259

100

0.904

Multiple sequence alignment