Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   C2H96_RS18305 Genome accession   NZ_CP026035
Coordinates   3600995..3601690 (+) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain PK5_68     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3595995..3606690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS18285 (C2H96_18250) folC 3596924..3598216 (+) 1293 WP_120028442.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  C2H96_RS18290 (C2H96_18255) comC 3598357..3599103 (+) 747 WP_021480242.1 A24 family peptidase Machinery gene
  C2H96_RS18295 (C2H96_18260) spoIIB 3599237..3600235 (+) 999 WP_070547606.1 stage II sporulation protein SpoIIB -
  C2H96_RS18300 (C2H96_18265) maf 3600389..3600958 (+) 570 WP_024572904.1 Maf family nucleotide pyrophosphatase -
  C2H96_RS18305 (C2H96_18270) ysxA/radC 3600995..3601690 (+) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  C2H96_RS18310 (C2H96_18275) mreB 3601782..3602795 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  C2H96_RS18315 (C2H96_18280) mreC 3602826..3603698 (+) 873 WP_003222609.1 rod shape-determining protein MreC -
  C2H96_RS18320 (C2H96_18285) mreD 3603695..3604213 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  C2H96_RS18325 (C2H96_18290) minC 3604266..3604946 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  C2H96_RS18330 (C2H96_18295) minD 3604948..3605754 (+) 807 WP_014664846.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=222409 C2H96_RS18305 WP_003246034.1 3600995..3601690(+) (ysxA/radC) [Bacillus subtilis strain PK5_68]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=222409 C2H96_RS18305 WP_003246034.1 3600995..3601690(+) (ysxA/radC) [Bacillus subtilis strain PK5_68]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGAAGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424

Multiple sequence alignment